Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00837X
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032626-9|CAA21529.1|  180|Caenorhabditis elegans Hypothetical ...    49   3e-06
U23516-8|AAG38879.1|  167|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical p...    27   7.1  

>AL032626-9|CAA21529.1|  180|Caenorhabditis elegans Hypothetical
           protein Y37D8A.10 protein.
          Length = 180

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 20/37 (54%), Positives = 27/37 (72%)
 Frame = +3

Query: 294 WDYLYPFPQSRLVLIICVSSYFILMGILTLYTTFKEK 404
           +DY  PFP+S++VL +C  SYFI MGIL +Y  + EK
Sbjct: 62  YDYYEPFPKSKIVLAVCSVSYFICMGILQMYQWYVEK 98



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 3/131 (2%)
 Frame = +1

Query: 118 TAEAAKI-NKWDGAAAKNAVDDAIREVMTGDLKCKESFALIDGRXXXXXXXXXXXXTHCY 294
           T E  K+ NKWDG   KNA+D+ +++++   +   ES  L++ R              C 
Sbjct: 2   TDEPVKVVNKWDGPTVKNALDEVVKKILNDKVGWTESHNLMNLRLLISFIGVAFSAFAC- 60

Query: 295 GIIFIHSLNQDWF*SSACHHISY*WVF*PSTLHS--KRRGIFVVAKEKVGNNTRVWEASS 468
           G  +     +     + C  +SY        ++     +     A E  G  +R W  SS
Sbjct: 61  GYDYYEPFPKSKIVLAVC-SVSYFICMGILQMYQWYVEKDCIYEATEVDGKQSRKWAWSS 119

Query: 469 YVKKHDDKYNL 501
            +K HDDKY L
Sbjct: 120 EIKAHDDKYTL 130


>U23516-8|AAG38879.1|  167|Caenorhabditis elegans Hypothetical
           protein B0416.2 protein.
          Length = 167

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -3

Query: 497 LYLSSCFFT*ELASQTLVLFPTFS---LATTKMPLLFECSVEGQ 375
           +Y+S C    E A+  + LF +F    L T ++P+L EC +  Q
Sbjct: 110 MYISECVTVYENANTMVRLFNSFGPYRLGTIRIPILCECRLRRQ 153


>Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical
           protein C53A5.13 protein.
          Length = 681

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 498 IVFIVVFLYIRTGFPD-PGVISNLLLGYHKDAPSL*M*CR 382
           ++ ++VF ++R    D PGV  + L+ Y  D+P+    CR
Sbjct: 617 LMCLLVFCFLRNSCQDRPGVKESALMYYRSDSPNTISTCR 656


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,292,121
Number of Sequences: 27780
Number of extensions: 242869
Number of successful extensions: 603
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)