Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00836
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 144 1e-35
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 143 2e-35
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 142 4e-35
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 29 0.72
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 28 0.95
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 27 1.7
SPAC3G9.15c |fcf2||rRNA processing protein Fcf2 |Schizosaccharom... 27 2.2
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 26 5.1
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 6.7
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 6.7
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom... 25 8.9
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 8.9
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 25 8.9
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 144 bits (348), Expect = 1e-35
Identities = 63/90 (70%), Positives = 73/90 (81%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 182
PKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I
Sbjct: 5 PKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAI 64
Query: 183 VKQRLIKVDGKVRTDPTYPAGFMDLSQLRR 272
+ QRLIKVDGKVRTD T+P GFMD+ + +
Sbjct: 65 LMQRLIKVDGKVRTDSTFPTGFMDVISVEK 94
Score = 140 bits (340), Expect = 1e-34
Identities = 62/84 (73%), Positives = 73/84 (86%)
Frame = +2
Query: 257 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 436
+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRY
Sbjct: 90 ISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRY 149
Query: 437 PDPLIKVNDSIQLDIATTRIMDFI 508
PDPLIKVND+I+L++ T +I FI
Sbjct: 150 PDPLIKVNDTIKLNLETNKIESFI 173
Score = 59.7 bits (138), Expect = 3e-10
Identities = 24/39 (61%), Positives = 32/39 (82%)
Frame = +1
Query: 508 QFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKD 624
+F++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD
Sbjct: 174 KFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKD 212
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 143 bits (347), Expect = 2e-35
Identities = 63/85 (74%), Positives = 71/85 (83%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 182
PKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I
Sbjct: 5 PKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAI 64
Query: 183 VKQRLIKVDGKVRTDPTYPAGFMDL 257
+ QRLIKVDGKVRTD T+P GFMD+
Sbjct: 65 LMQRLIKVDGKVRTDSTFPTGFMDV 89
Score = 139 bits (337), Expect = 3e-34
Identities = 61/84 (72%), Positives = 73/84 (86%)
Frame = +2
Query: 257 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 436
+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRY
Sbjct: 90 ISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRY 149
Query: 437 PDPLIKVNDSIQLDIATTRIMDFI 508
PDPLIKVND+I+L++ T +I FI
Sbjct: 150 PDPLIKVNDTIKLNLETNKIESFI 173
Score = 59.7 bits (138), Expect = 3e-10
Identities = 24/39 (61%), Positives = 32/39 (82%)
Frame = +1
Query: 508 QFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKD 624
+F++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD
Sbjct: 174 KFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKD 212
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 142 bits (344), Expect = 4e-35
Identities = 62/90 (68%), Positives = 73/90 (81%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 182
PKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I
Sbjct: 5 PKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAI 64
Query: 183 VKQRLIKVDGKVRTDPTYPAGFMDLSQLRR 272
+ QRLI+VDGKVRTD T+P GFMD+ + +
Sbjct: 65 LMQRLIQVDGKVRTDSTFPTGFMDVISVEK 94
Score = 140 bits (340), Expect = 1e-34
Identities = 62/84 (73%), Positives = 73/84 (86%)
Frame = +2
Query: 257 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 436
+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRY
Sbjct: 90 ISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRY 149
Query: 437 PDPLIKVNDSIQLDIATTRIMDFI 508
PDPLIKVND+I+L++ T +I FI
Sbjct: 150 PDPLIKVNDTIKLNLETNKIESFI 173
Score = 59.7 bits (138), Expect = 3e-10
Identities = 24/39 (61%), Positives = 32/39 (82%)
Frame = +1
Query: 508 QFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKD 624
+F++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD
Sbjct: 174 KFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKD 212
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 28.7 bits (61), Expect = 0.72
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Frame = +3
Query: 114 LPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFM--DLSQLRRLMNCF 287
LPLV ++ + + N L IV Q L+ V Y + +LS+++ L+NCF
Sbjct: 376 LPLVKQYDHKFRNLYSPNIFLSIV-QALVFCGDMVNIQRWYNMSRVNSELSRIKHLLNCF 434
Query: 288 V*SMMLRADSQSTVSPLRRLSTSCVK 365
+ S + D + LR L +K
Sbjct: 435 LNSSTVSLDVSMVLELLRDLKKKKIK 460
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 28.3 bits (60), Expect = 0.95
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 451 QSQRFHPVRHCNYEDYGLHQFES 519
++++ HPVRH YED FE+
Sbjct: 5 ENEKIHPVRHSKYEDKSKLPFET 27
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -2
Query: 245 SSRISRVSPNFPIN--LYEALFH-NFQDFVSGQSILQTIPQENHQGQALAQLVGT 90
SS+ + P+ P++ +E F NFQ S L IP++ G ++A+++GT
Sbjct: 27 SSKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81
>SPAC3G9.15c |fcf2||rRNA processing protein Fcf2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 230
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = -1
Query: 576 HDGAHTPQVTASRDHTQVPGLKLMKSIILVVAMSNWME 463
+D + P V H PG+ K I A SNW +
Sbjct: 80 NDASFEPTVPIYESHVSAPGISKKKKNIKDTAGSNWFD 117
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 25.8 bits (54), Expect = 5.1
Identities = 20/86 (23%), Positives = 33/86 (38%)
Frame = -1
Query: 324 WIVNLPLTS*IRRNSSLVFSIETNP*IQQDK*GQS*LSHQPL*GVVSQFSGLRFRSKHTS 145
W+V + SL+ P ++ K G + + G + + L ++ HTS
Sbjct: 237 WLVEFSSVCQAAESISLIAVNNNRPPVELPKSGDVLSNREWEAGKIDAMNSLIAQNLHTS 296
Query: 144 DDSSGKSPGASTRATCGDRLTVSVHT 67
SP AST ++ V HT
Sbjct: 297 ASQVSLSPMASTASSSVTNSPVDTHT 322
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 346 SLLRGDTVDCESALNIID*TKQ 281
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 6.7
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 260 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRTIR 433
S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H ++
Sbjct: 1721 SLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEMLK 1779
>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 25.0 bits (52), Expect = 8.9
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -1
Query: 621 LDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPGLK 511
LD+H V S+ D A T + AS DH VPG K
Sbjct: 174 LDLHQVAQVAQSVI--DNAAT--IAASLDHCAVPGRK 206
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 120 LVIFLRNRLKYALTGNEVLKIV 185
L+ F+ RL++ LT E+LKI+
Sbjct: 145 LIDFMNTRLQHRLTEGEILKIL 166
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 25.0 bits (52), Expect = 8.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 508 QFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIV 612
+FE LC + G L R+G + E GS D+V
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVV 350
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,596
Number of Sequences: 5004
Number of extensions: 59909
Number of successful extensions: 175
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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