Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00836
(624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 144 7e-35
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 144 7e-35
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 144 7e-35
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 0.74
04_03_1015 - 21734381-21736534 29 2.3
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 3.0
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 29 4.0
02_05_0202 + 26708049-26709074 28 5.2
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 5.2
09_06_0171 - 21308993-21309671,21309768-21309862,21309944-213100... 28 6.9
08_02_1359 + 26382605-26382815,26382907-26382998,26383722-263837... 27 9.2
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 27 9.2
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 144 bits (348), Expect = 7e-35
Identities = 63/89 (70%), Positives = 74/89 (83%)
Frame = +3
Query: 6 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 185
KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV+ I+
Sbjct: 22 KKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVISIL 81
Query: 186 KQRLIKVDGKVRTDPTYPAGFMDLSQLRR 272
QR + VDGKVRTD TYPAGFMD+ + +
Sbjct: 82 MQRHVMVDGKVRTDKTYPAGFMDVVSIAK 110
Score = 123 bits (296), Expect = 1e-28
Identities = 55/92 (59%), Positives = 69/92 (75%)
Frame = +2
Query: 257 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 436
VSI KT E FRL+YD KGRF +H I E+AK+KLCKV+ V G K +P+L T+DGRTIRY
Sbjct: 106 VSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFGQKGIPFLNTNDGRTIRY 165
Query: 437 PDPLIKVNDSIQLDIATTRIMDFISLSPGTCV 532
PDPLIK ND+I++D+ T +I+DFI G V
Sbjct: 166 PDPLIKANDTIKIDLETNKIVDFIKFDVGNIV 197
Score = 60.1 bits (139), Expect = 1e-09
Identities = 23/39 (58%), Positives = 32/39 (82%)
Frame = +1
Query: 508 QFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKD 624
+F+ GN+ M+TGGRN GRVG I SRE+H GSF+ +H++D
Sbjct: 190 KFDVGNIVMVTGGRNTGRVGVIKSREKHKGSFETIHVED 228
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 144 bits (348), Expect = 7e-35
Identities = 63/84 (75%), Positives = 73/84 (86%)
Frame = +3
Query: 6 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 185
KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+
Sbjct: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISIL 65
Query: 186 KQRLIKVDGKVRTDPTYPAGFMDL 257
QR + VDGKVRTD TYPAGFMD+
Sbjct: 66 MQRHVLVDGKVRTDKTYPAGFMDV 89
Score = 119 bits (286), Expect = 2e-27
Identities = 51/92 (55%), Positives = 68/92 (73%)
Frame = +2
Query: 257 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 436
+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+DGRTIRY
Sbjct: 90 ISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRY 149
Query: 437 PDPLIKVNDSIQLDIATTRIMDFISLSPGTCV 532
PDP+IK ND+I++D+ T +I+DFI G V
Sbjct: 150 PDPIIKANDTIKIDLETNKIVDFIKFDVGNVV 181
Score = 58.4 bits (135), Expect = 4e-09
Identities = 22/39 (56%), Positives = 32/39 (82%)
Frame = +1
Query: 508 QFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKD 624
+F+ GN+ M+TGGRN GRVG I +RE+H GSF+ +H++D
Sbjct: 174 KFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVED 212
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 144 bits (348), Expect = 7e-35
Identities = 63/84 (75%), Positives = 73/84 (86%)
Frame = +3
Query: 6 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 185
KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+
Sbjct: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISIL 65
Query: 186 KQRLIKVDGKVRTDPTYPAGFMDL 257
QR + VDGKVRTD TYPAGFMD+
Sbjct: 66 MQRHVLVDGKVRTDKTYPAGFMDV 89
Score = 120 bits (288), Expect = 1e-27
Identities = 52/92 (56%), Positives = 68/92 (73%)
Frame = +2
Query: 257 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 436
+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+DGRTIRY
Sbjct: 90 ISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRY 149
Query: 437 PDPLIKVNDSIQLDIATTRIMDFISLSPGTCV 532
PDPLIK ND+I++D+ T +I+DFI G V
Sbjct: 150 PDPLIKANDTIKIDLETNKIVDFIKFDVGNVV 181
Score = 58.4 bits (135), Expect = 4e-09
Identities = 22/39 (56%), Positives = 32/39 (82%)
Frame = +1
Query: 508 QFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKD 624
+F+ GN+ M+TGGRN GRVG I +RE+H GSF+ +H++D
Sbjct: 174 KFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVED 212
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 135 SGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 34
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>04_03_1015 - 21734381-21736534
Length = 717
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +3
Query: 348 STSCVKSSVWRPDLRMFRTW*RMMAAPSAIQTHLSKSTIPSS 473
S+S V S+V+ LR+ T R +AA I THL+ ST PS+
Sbjct: 38 SSSQVPSAVYASLLRL-ATSHRSLAAARRIATHLASSTAPST 78
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -3
Query: 148 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKR 20
F L ++ + L G G+G Y PPSLSN + AFKR
Sbjct: 35 FNVALNRLPASAGASPLLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +2
Query: 32 SQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESS----EVCFDRKRSPENCETTP 196
+QS+ V + RCV ETV + P + R+ G+F + + FD+ + +CE P
Sbjct: 894 NQSILVSLSSRCVWKETVCQRPHLLRIKYYGNFDKPLGRFLRDQLFDQNNNCISCELPP 952
>02_05_0202 + 26708049-26709074
Length = 341
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -1
Query: 612 HNVEGAGMSLAGHDGAHTPQVTASRDHTQVPG 517
+ V +G +L GH +H A+ H Q PG
Sbjct: 268 YRVFASGQALGGHKKSHVCSAAAAAAHAQTPG 299
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 284 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 388
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>09_06_0171 -
21308993-21309671,21309768-21309862,21309944-21310084,
21310177-21310348,21310445-21310548,21311254-21311370
Length = 435
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -2
Query: 299 HRLDETVH*SSQLRQIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQ 156
H DE + +L + K++ SRV PN P++ YE L F+ SG+
Sbjct: 388 HSEDEEKE-NHELPDLPKANLSSRVHPNMPLD-YETLTARFEALKSGK 433
>08_02_1359 +
26382605-26382815,26382907-26382998,26383722-26383791,
26383895-26384013,26384580-26384676,26384781-26384860,
26384986-26385180,26385460-26385520,26386408-26386468,
26386900-26386993,26387085-26387157,26387158-26387270,
26387444-26387587
Length = 469
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 180 FSGLRFRSKHTSDDSSGKSPGASTRATCG 94
FSGLR S+ S S SP A++ CG
Sbjct: 9 FSGLRLDSRRLSSSSLPTSPSAASSNGCG 37
>02_05_0672 + 30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -2
Query: 254 IHKSSRISRVSPNFPINLYEALFHNFQDFVSG 159
+H+SS ++R++P F + Y L H + ++ G
Sbjct: 1024 LHRSSSVARIAPEFVV--YSELLHTKRSYMHG 1053
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,524,554
Number of Sequences: 37544
Number of extensions: 427064
Number of successful extensions: 1338
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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