Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00836
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   130   6e-31
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical...    29   2.7  
AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical...    29   2.7  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   4.7  
U41263-8|AAC24430.1|  455|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  130 bits (315), Expect = 6e-31
 Identities = 61/95 (64%), Positives = 71/95 (74%)
 Frame = +3

Query: 3   PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 182
           PKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  KI
Sbjct: 4   PKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKI 63

Query: 183 VKQRLIKVDGKVRTDPTYPAGFMDLSQLRRLMNCF 287
           + QR+++VDGKVRT   +P GFMD+  + R    F
Sbjct: 64  LTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYF 98



 Score =  116 bits (279), Expect = 1e-26
 Identities = 52/89 (58%), Positives = 65/89 (73%)
 Frame = +2

Query: 257 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 436
           V+IE+TNE FR++YD KGR+ +HRI   EA +KLCKVK V T  K VP L T DGRTIRY
Sbjct: 89  VAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRY 148

Query: 437 PDPLIKVNDSIQLDIATTRIMDFISLSPG 523
           PDP +KVND+I  +I+T +I D +   PG
Sbjct: 149 PDPHVKVNDTIVFNISTQKITDSVKFEPG 177



 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 26/39 (66%), Positives = 31/39 (79%)
 Frame = +1

Query: 508 QFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKD 624
           +FE GNL  +TGGRN+GRVG I  RER PG+ DI+HIKD
Sbjct: 173 KFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKD 211


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +2

Query: 308 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 439
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13b protein.
          Length = 377

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 525 LVYDHGRP*LGACGHHRVPRETSRLLRH 608
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234


>AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13a protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 525 LVYDHGRP*LGACGHHRVPRETSRLLRH 608
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -1

Query: 465  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 301
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


>U41263-8|AAC24430.1|  455|Caenorhabditis elegans Hypothetical
           protein T19D12.10 protein.
          Length = 455

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +2

Query: 242 WIYGFVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 421
           ++YG V+   T   F    D      +HR    +   K+   K V +G K+VPYL     
Sbjct: 190 YLYGGVAFLVTTAFFAFFRDSA---QVHRNVSVKELEKISAGKTVTSGRKSVPYLAVCKN 246

Query: 422 RTI 430
           + I
Sbjct: 247 KVI 249


>Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical
           protein T04C10.4 protein.
          Length = 208

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 424 HHPLSRPTYQSQRFHPVRHCNYEDYGLH 507
           HH    PTY    F+P  H +Y+ + L+
Sbjct: 32  HHHHQSPTYPQSYFNPYSHQSYQQHHLN 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,974,009
Number of Sequences: 27780
Number of extensions: 347702
Number of successful extensions: 909
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)