Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00836
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   1.8  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   4.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.2  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   7.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.8  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   9.8  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = -3

Query: 457 DFDKWVWIADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNIID*TKQF 278
           D    +WI  G  +M +    + R G+  +  T L+ ++L    + CE  +NI    K +
Sbjct: 57  DVHVMIWIGFGF-LMTF----LRRYGQSAVGLTFLLGAILVQVAIICEGVMNIQKDNKSY 111

Query: 277 ISL 269
           +SL
Sbjct: 112 LSL 114


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 618 DVHNVEGAGMSLAGHD 571
           DVH V GAG  +  HD
Sbjct: 110 DVHGVIGAGHWIGDHD 125


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 141 RLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 242
           R K+ LTG   L   K RL+  +      P +P+
Sbjct: 182 RTKHRLTGETRLSATKGRLVITEPVGSVRPKFPS 215


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 151 YFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLS 50
           Y R  +R  T  +H ++    +DG+G Y   S S
Sbjct: 83  YNRMDMRNATYYQHQQDHGSGMDGMGGYRSASPS 116


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 29  RSQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPE 136
           +S++ DV ++WR +  E  NR+    R++    + E
Sbjct: 261 QSETYDVLRSWRNLMDEHSNRTNSDPRMILTEAYTE 296


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 159 TGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDLSQ 263
           T +++    + R+ ++   VRT    P GF DL Q
Sbjct: 733 TMSQMPPTAQPRMERLAEAVRTASQIPQGFKDLVQ 767


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -3

Query: 346 SLLRGDTVDCESALNII 296
           SLL+ +TV C+ A++++
Sbjct: 381 SLLKENTVTCQEAMHML 397


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,221
Number of Sequences: 438
Number of extensions: 4046
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)