Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00835X
         (346 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   2.5  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    25   4.4  

>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = -3

Query: 245  YNYVTLHTDTRA*V*YKIRLLTFYSSRGLYHVTM*DKYDYKN*TNTTSVKYNFIL-LL*L 69
            Y Y+ L  D      +K  +  FY      H  M  + +Y+N T   S+    IL LL +
Sbjct: 1103 YEYIQLSDDHTLDDFWKTPVPIFYGEPDCIHNDMKGELNYENETEGFSINIREILDLLSI 1162

Query: 68   RKFSLWDVLNIF 33
              + + DV  +F
Sbjct: 1163 LYYGIRDVHTLF 1174


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 276 FQHRG*RINHLQLCDLTYRHSSLSLVQNQTFNILQL 169
           FQH G     ++ C +  RH  ++L  N+T  +LQL
Sbjct: 173 FQHEG-----IEFCKINVRHELMNLASNKT--LLQL 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,191,180
Number of Sequences: 5004
Number of extensions: 19598
Number of successful extensions: 25
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)