Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00834X
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...    27   1.7  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   3.0  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   3.0  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    26   3.0  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    25   4.0  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   6.9  
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    24   9.1  

>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 30  ILKILMTFKISSVSLVKRAYTMEPGTNCPQT*RPRRNSAQKW 155
           +++ L +++I + ++V     ++P T CPQ    RR   QK+
Sbjct: 241 MIQELTSYEIDTHNIVVNQLLLDPNTTCPQC-MARRKMQQKY 281


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 334 NCGTRATRTSSKITSRANSNSYSTIRELNSSATIT 438
           N  T AT TSS ++S A SNS ++    +SS   T
Sbjct: 201 NSTTSATATSSSLSSTAASNSATSSSLASSSLNST 235


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 349  ATRTSSKITSRANSNSYSTIRELNSSAT 432
            +T TS+ I   + ++++ST+R+ N SAT
Sbjct: 1487 STVTSNPIYQGSGTSTWSTVRQWNGSAT 1514


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 101 RLHSISPFYQAHARDFECHQN 39
           RLHS++  Y  H + +  HQN
Sbjct: 572 RLHSLNNSYMDHQKSYRYHQN 592


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 234 LCAPRRQQGSGVCRDVVSRLVSQGIKNAISF 326
           +CA   +  S  CR++++R++++G   AI F
Sbjct: 37  ICAMDAKARSKPCRNILNRIIAEGEFEAIVF 67


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 303  GIKNAISFAYKLWHXGHKDIVEDYFPSEFQ 392
            GI N + +    WH   K  + D FP++FQ
Sbjct: 957  GIPNRLIYKNCSWH---KTFISDVFPTKFQ 983


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 364 SKITSRANSNSYSTIRELNS 423
           S I S+ N N YST+ E  S
Sbjct: 304 STIQSKLNKNEYSTLEEFES 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,603,676
Number of Sequences: 5004
Number of extensions: 27529
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)