Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00834X
         (444 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0655 + 26974366-26974398,26974480-26974899,26975023-26975859     29   1.7  
02_02_0474 + 10738476-10738797,10739568-10739677,10739891-107400...    28   2.9  
06_03_0897 + 25762154-25763056,25764189-25764800                       28   3.9  
12_02_0339 - 17721664-17722407,17722921-17723556                       27   5.1  
02_04_0653 - 24747959-24748276,24748847-24748959,24749815-247500...    27   6.8  
12_01_0337 - 2591689-2593839                                           27   9.0  
09_04_0225 - 15855544-15855727,15855796-15856406                       27   9.0  

>04_04_0655 + 26974366-26974398,26974480-26974899,26975023-26975859
          Length = 429

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 359 VLVALVPQFVRERDGVLDALRDEPRDDVATDAGA 258
           +L   V  F  E+DG +DAL+   R + A D GA
Sbjct: 38  LLCVYVGAFWTEKDGKMDALKSSCRSEEAADEGA 71


>02_02_0474 +
           10738476-10738797,10739568-10739677,10739891-10740094,
           10740400-10740576,10740659-10740811,10741535-10741624,
           10741939-10742049,10742169-10742285,10742881-10743032,
           10743116-10743200,10743597-10743691,10744211-10744376,
           10744459-10744654,10745662-10745795
          Length = 703

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 162 PTQGQSTITCTTWLRAATTSTR*RLCAPRRQQGSGVCRDVVSRLVSQG 305
           PT   ++ +    ++AATT+T  R  AP+ Q  +  CR     +V+ G
Sbjct: 32  PTPTSASASAAMQMQAATTTTAARRLAPKPQPQANRCRPSSVSVVAAG 79


>06_03_0897 + 25762154-25763056,25764189-25764800
          Length = 504

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 234 LCAPRRQQGSGVCRDVVSRLVSQGIKNAISFAYKLWHXGHKDIVEDYFP 380
           +C+PRR++G G CR   S      + +    A  L H   +DI   + P
Sbjct: 28  VCSPRRRRGRGSCRLPPSPWALPVVGHLHHLAGALQHRAMRDIARRHGP 76


>12_02_0339 - 17721664-17722407,17722921-17723556
          Length = 459

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +3

Query: 261 SGVCRDVV--SRLVSQGIKNAIS-FAYKLWHXGHKDIVEDYFPSEFQLI 398
           SG+ RDVV   R    G+   ++ +  + WH    ++V  YF S + L+
Sbjct: 382 SGLSRDVVLEPRSALDGVHREVNAYCRRRWHRWRANLVHTYFRSPWSLM 430


>02_04_0653 -
           24747959-24748276,24748847-24748959,24749815-24750015,
           24750097-24750267,24750354-24750425,24751515-24751543,
           24752161-24752303
          Length = 348

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 363 VEDYFPSEFQLILDHKRIKLIGNHYNQ 443
           +EDYFP+E+   L  ++IKL+    NQ
Sbjct: 177 IEDYFPAEYD--LRREKIKLLKGECNQ 201


>12_01_0337 - 2591689-2593839
          Length = 716

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -2

Query: 344 VPQFVRERDGVLDALRDEPRDD 279
           VP F++E + VL ALRDE R D
Sbjct: 192 VPPFIKECNLVLRALRDEARWD 213


>09_04_0225 - 15855544-15855727,15855796-15856406
          Length = 264

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 126 RPRRNSAQKWSLPTQGQSTITCTTWLRAATTSTR*RLCAPRRQQG 260
           +PRR S    + P+      +CT W  +   ++R   C P R  G
Sbjct: 162 KPRRTSTSAGATPSATTRCRSCTAWATSCPGTSR-AGCPPTRTSG 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,765,778
Number of Sequences: 37544
Number of extensions: 195931
Number of successful extensions: 600
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)