Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00834X
         (444 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC036653-1|AAH36653.2|  637|Homo sapiens poly(A) polymerase beta...    29   7.2  
AF218840-1|AAF81013.1|  636|Homo sapiens testis-specific poly(A)...    29   7.2  
AC092610-3|AAS07561.1|  636|Homo sapiens unknown protein.              29   7.2  
BC068459-1|AAH68459.1|   75|Homo sapiens hCG2040556 protein.           29   9.6  

>BC036653-1|AAH36653.2|  637|Homo sapiens poly(A) polymerase beta
           (testis specific) protein.
          Length = 637

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 361 MSLWPXCHNLYANEMAFL 308
           + LW  CHN+Y+N + FL
Sbjct: 228 IKLWAKCHNIYSNILGFL 245


>AF218840-1|AAF81013.1|  636|Homo sapiens testis-specific poly(A)
           polymerase protein.
          Length = 636

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 361 MSLWPXCHNLYANEMAFL 308
           + LW  CHN+Y+N + FL
Sbjct: 227 IKLWAKCHNIYSNILGFL 244


>AC092610-3|AAS07561.1|  636|Homo sapiens unknown protein.
          Length = 636

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 361 MSLWPXCHNLYANEMAFL 308
           + LW  CHN+Y+N + FL
Sbjct: 227 IKLWAKCHNIYSNILGFL 244


>BC068459-1|AAH68459.1|   75|Homo sapiens hCG2040556 protein.
          Length = 75

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 98  LHSISPFYQAHARDFECHQNFQNIRRQRRVFR 3
           LH +   Y    +DFE HQ+ +N+  Q  V R
Sbjct: 16  LHELKGHYAITRKDFESHQHMENLTSQDEVPR 47


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,803,751
Number of Sequences: 237096
Number of extensions: 1030205
Number of successful extensions: 2288
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2285
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3659526016
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)