Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00834X
         (444 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   1.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.0  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    21   4.6  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    21   4.6  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    21   4.6  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   4.6  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    21   4.6  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    21   4.6  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    21   4.6  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 351 HKDIVEDYFPSEFQLILDHKRIKLIGN 431
           +KDI +   P+E QLI  H  + ++G+
Sbjct: 127 NKDITKRPLPNESQLIKRHPIVTIMGH 153


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 12/57 (21%), Positives = 22/57 (38%)
 Frame = -3

Query: 352 WPXCHNLYANEMAFLMPCETSRETTSRQTPEPCCRRGAHSLHRVDVVAARNQVVQVI 182
           WP C  +  +  AFL    T      R T +   R    S   + +   R+++  ++
Sbjct: 285 WPGCEVICEDYQAFLKHLNTEHTLDDRSTAQARVRMQVVSQLEIQLQKERDRLTAMM 341


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 337 NLYANEMAFLMPCETSRETTSRQTPEPCCR 248
           N Y NE  +    ETS+E +  +T    C+
Sbjct: 48  NSYKNEREYQKYRETSKERSRDRTERERCK 77


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 337 NLYANEMAFLMPCETSRETTSRQTPEPCCR 248
           N Y NE  +    ETS+E +  +T    C+
Sbjct: 48  NSYKNEREYQKYRETSKERSRDRTERERCK 77


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 337 NLYANEMAFLMPCETSRETTSRQTPEPCCR 248
           N Y NE  +    ETS+E +  +T    C+
Sbjct: 48  NSYKNEREYQKYRETSKERSRDRTERERCK 77


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 337 NLYANEMAFLMPCETSRETTSRQTPEPCCR 248
           N Y NE  +    ETS+E +  +T    C+
Sbjct: 48  NSYKNEREYQKYRETSKERSRDRTERERCK 77


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 337 NLYANEMAFLMPCETSRETTSRQTPEPCCR 248
           N Y NE  +    ETS+E +  +T    C+
Sbjct: 48  NSYKNEREYQKYRETSKERSRDRTERERCK 77


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 337 NLYANEMAFLMPCETSRETTSRQTPEPCCR 248
           N Y NE  +    ETS+E +  +T    C+
Sbjct: 48  NSYKNEREYQKYRETSKERSRDRTERERCK 77


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 337 NLYANEMAFLMPCETSRETTSRQTPEPCCR 248
           N Y NE  +    ETS+E +  +T    C+
Sbjct: 48  NSYKNEREYQKYRETSKERSRDRTERERCK 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,414
Number of Sequences: 438
Number of extensions: 1924
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)