Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00833
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    26   5.0  
SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyce...    26   6.7  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    25   8.8  

>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = -2

Query: 694 PVVGGNDERVLVLCRFIVMVQ*IAILKFVCSWNSGPSGKRSNSIQI*VNFYVIENVKK 521
           PVV   +    VL  ++ +++ + +L+   SW  G S K S  I +   F+ + N +K
Sbjct: 101 PVVNNAETNKTVLLPYLNVLEKLLLLQDYSSWTHGNSCKTSIYILL---FFALSNTEK 155


>SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 303 EVRFSSVVDRFYDSRE 350
           EV F SVVDR+YD  E
Sbjct: 57  EVLFESVVDRYYDGFE 72


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
            Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 438  YFLYHD-VHTSQKGIVST*TYNKQWLSESFLTFSIT*KLTQICMELERLPLGPLF 599
            + +YH+ + TS++ + +  T N +WL E   TF       Q+    + L + PL+
Sbjct: 1095 WVIYHELIQTSKEYMHTVSTVNPKWLVEVAPTFFKFANANQVSKTKKNLKVLPLY 1149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,123,606
Number of Sequences: 5004
Number of extensions: 63878
Number of successful extensions: 135
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)