Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00833
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1042 + 33718988-33720112,33720709-33721305,33721862-337222...    29   3.0  
08_01_0087 + 630355-630403,630502-630699,631858-631943,632238-63...    29   5.3  

>02_05_1042 +
           33718988-33720112,33720709-33721305,33721862-33722223,
           33722383-33722683,33723149-33723271,33723535-33723990,
           33724102-33724602
          Length = 1154

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = +2

Query: 662 ENPL--IVSTYHRIAFPVDSANTTLARV 739
           E+PL  I+S  H+I F +DS+ TT +R+
Sbjct: 606 EDPLNIIISNMHKILFKIDSSTTTSSRI 633


>08_01_0087 +
           630355-630403,630502-630699,631858-631943,632238-632946,
           633029-633194,633459-633934,634023-634873,635078-635987,
           636597-636784
          Length = 1210

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = -3

Query: 552 LTFTLSRTLKNFH*ATVYCMFTLKLFLSGLYVHRGTENNSKSLDQDVLDAPTT 394
           L FT+   + ++    + C+  L L ++   +HR +     S+D +V+ AP++
Sbjct: 96  LPFTIINNVAHYGPNEIRCVLRLLLIMASKQLHRSSYYVGTSIDNEVVCAPSS 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,434,569
Number of Sequences: 37544
Number of extensions: 371835
Number of successful extensions: 820
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)