Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00833
(755 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF333072-2|AAL60056.1| 702|Homo sapiens pol protein protein. 31 3.4
AF164609-1|AAD51791.1| 1177|Homo sapiens Gag-Pro-Pol protein pro... 31 3.4
U87595-1|AAB63117.1| 197|Homo sapiens polymerase protein. 30 7.8
U87593-1|AAB63116.1| 201|Homo sapiens polymerase protein. 30 7.8
U87592-1|AAB63115.1| 201|Homo sapiens polymerase protein. 30 7.8
U87591-1|AAB63114.1| 198|Homo sapiens polymerase protein. 30 7.8
U87590-1|AAB63113.1| 198|Homo sapiens polymerase protein. 30 7.8
U87589-1|AAB63112.1| 197|Homo sapiens polymerase protein. 30 7.8
M14123-4|AAA88033.1| 1361|Homo sapiens protein ( Human endogenou... 30 7.8
DQ821442-1|ABG91576.1| 573|Homo sapiens reverse transcriptase p... 30 7.8
BC028725-1|AAH28725.3| 334|Homo sapiens ELMO/CED-12 domain cont... 30 7.8
AY186778-1|AAO27434.1| 727|Homo sapiens polymerase protein. 30 7.8
AF298588-1|AAK11554.1| 956|Homo sapiens polymerase protein. 30 7.8
AF298587-1|AAK11553.1| 956|Homo sapiens polymerase protein. 30 7.8
AF164613-1|AAD51796.1| 1755|Homo sapiens Gag-Pro-Pol protein pro... 30 7.8
AF164611-1|AAD51793.1| 2294|Homo sapiens Gag-Pro-Pol-Env protein... 30 7.8
AF080234-1|AAC63294.1| 572|Homo sapiens polymerase protein. 30 7.8
AF080232-1|AAC63292.1| 572|Homo sapiens polymerase protein. 30 7.8
AF080231-1|AAC63291.1| 596|Homo sapiens polymerase protein. 30 7.8
AF080229-1|AAC63290.1| 597|Homo sapiens polymerase protein. 30 7.8
>AF333072-2|AAL60056.1| 702|Homo sapiens pol protein protein.
Length = 702
Score = 31.5 bits (68), Expect = 3.4
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +2
Query: 575 TFAARAAVPTTYKFEYCYLLHHYDK---AAQHENPLI 676
TF RA P KF CY++H++D AA+ ++ LI
Sbjct: 64 TFVGRALQPVRDKFSDCYIIHYFDDILCAAETKDKLI 100
>AF164609-1|AAD51791.1| 1177|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1177
Score = 31.5 bits (68), Expect = 3.4
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +2
Query: 575 TFAARAAVPTTYKFEYCYLLHHYDK--AAQHENPLIVSTYHRIAFPVDSANTTLA 733
TF RA P KF CY++H+ D A ++ Y + V SA +A
Sbjct: 1097 TFVGRALQPVREKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVASAGLAIA 1151
>U87595-1|AAB63117.1| 197|Homo sapiens polymerase protein.
Length = 197
Score = 30.3 bits (65), Expect = 7.8
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +2
Query: 575 TFAARAAVPTTYKFEYCYLLHHYDK--AAQHENPLIVSTYHRIAFPVDSANTTLA 733
TF A+ P KF CY++H+ D A ++ Y + V +A T+A
Sbjct: 100 TFVAQVLQPVRDKFSDCYIIHYVDDILCAAETRDKLIDCYTFLQTEVANAGLTIA 154
>U87593-1|AAB63116.1| 201|Homo sapiens polymerase protein.
Length = 201
Score = 30.3 bits (65), Expect = 7.8
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +2
Query: 575 TFAARAAVPTTYKFEYCYLLHHYDK---AAQHENPLI 676
TF RA P KF CY++H+ D AA+ ++ LI
Sbjct: 103 TFVGRALQPVREKFSDCYIIHYIDDILCAAETKDKLI 139
>U87592-1|AAB63115.1| 201|Homo sapiens polymerase protein.
Length = 201
Score = 30.3 bits (65), Expect = 7.8
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +2
Query: 575 TFAARAAVPTTYKFEYCYLLHHYDK---AAQHENPLI 676
TF RA P KF CY++H+ D AA+ ++ LI
Sbjct: 103 TFVGRALQPVREKFSDCYIIHYIDDILCAAEMKDKLI 139
>U87591-1|AAB63114.1| 198|Homo sapiens polymerase protein.
Length = 198
Score = 30.3 bits (65), Expect = 7.8
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +2
Query: 575 TFAARAAVPTTYKFEYCYLLHHYDK---AAQHENPLI 676
TF RA P KF CY++H+ D AA+ ++ LI
Sbjct: 100 TFVGRALQPVREKFSDCYIIHYIDDILCAAETKDKLI 136
>U87590-1|AAB63113.1| 198|Homo sapiens polymerase protein.
Length = 198
Score = 30.3 bits (65), Expect = 7.8
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +2
Query: 575 TFAARAAVPTTYKFEYCYLLHHYDK---AAQHENPLI 676
TF RA P KF CY++H+ D AA+ ++ LI
Sbjct: 100 TFVGRALQPVREKFSDCYIIHYIDDILCAAETKDKLI 136
>U87589-1|AAB63112.1| 197|Homo sapiens polymerase protein.
Length = 197
Score = 30.3 bits (65), Expect = 7.8
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +2
Query: 575 TFAARAAVPTTYKFEYCYLLHHYDK--AAQHENPLIVSTYHRIAFPVDSANTTLA 733
TF A+ P KF CY++H+ D A ++ Y + V +A T+A
Sbjct: 100 TFVAQVLQPVRDKFSDCYIIHYVDDILCAAETRDKLIDCYTFLQTEVANAGLTIA 154
>M14123-4|AAA88033.1| 1361|Homo sapiens protein ( Human endogenous
retrovirus HERV-K10. ).
Length = 1361
Score = 30.3 bits (65), Expect = 7.8
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +2
Query: 575 TFAARAAVPTTYKFEYCYLLHHYDK---AAQHENPLI 676
TF RA P KF CY++H+ D AA+ ++ LI
Sbjct: 76 TFVGRALQPVREKFSDCYIIHYIDDILCAAETKDKLI 112
>DQ821442-1|ABG91576.1| 573|Homo sapiens reverse transcriptase
protein.
Length = 573
Score = 30.3 bits (65), Expect = 7.8
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +2
Query: 575 TFAARAAVPTTYKFEYCYLLHHYDK---AAQHENPLI 676
TF RA P KF CY++H+ D AA+ ++ LI
Sbjct: 174 TFVGRALQPVREKFSDCYIIHYIDDILCAAETKDKLI 210
>BC028725-1|AAH28725.3| 334|Homo sapiens ELMO/CED-12 domain
containing 1 protein.
Length = 334
Score = 30.3 bits (65), Expect = 7.8
Identities = 13/58 (22%), Positives = 32/58 (55%)
Frame = +2
Query: 524 FNVLDNVKVNSNLYGVGTFAARAAVPTTYKFEYCYLLHHYDKAAQHENPLIVSTYHRI 697
+N+L + + ++ Y + A A + ++ +CYL+H + K E+P+ + ++R+
Sbjct: 248 YNLLVSGALKTHFYNI---APEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFNRV 302
>AY186778-1|AAO27434.1| 727|Homo sapiens polymerase protein.
Length = 727
Score = 30.3 bits (65), Expect = 7.8
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +2
Query: 575 TFAARAAVPTTYKFEYCYLLHHYDK---AAQHENPLI 676
TF RA P KF CY++H+ D AA+ ++ LI
Sbjct: 37 TFVGRALQPVREKFSDCYIIHYIDDILCAAETKDKLI 73
>AF298588-1|AAK11554.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 30.3 bits (65), Expect = 7.8
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +2
Query: 575 TFAARAAVPTTYKFEYCYLLHHYDK---AAQHENPLI 676
TF RA P KF CY++H+ D AA+ ++ LI
Sbjct: 174 TFVGRALQPVREKFSDCYIIHYIDDILCAAETKDKLI 210
>AF298587-1|AAK11553.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 30.3 bits (65), Expect = 7.8
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +2
Query: 575 TFAARAAVPTTYKFEYCYLLHHYDK---AAQHENPLI 676
TF RA P KF CY++H+ D AA+ ++ LI
Sbjct: 174 TFVGRALQPVREKFSDCYIIHYIDDILCAAETKDKLI 210
>AF164613-1|AAD51796.1| 1755|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1755
Score = 30.3 bits (65), Expect = 7.8
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +2
Query: 575 TFAARAAVPTTYKFEYCYLLHHYDK---AAQHENPLI 676
TF RA P KF CY++H+ D AA+ ++ LI
Sbjct: 1097 TFVGRALQPVREKFSDCYIIHYIDDILCAAETKDKLI 1133
>AF164611-1|AAD51793.1| 2294|Homo sapiens Gag-Pro-Pol-Env protein
protein.
Length = 2294
Score = 30.3 bits (65), Expect = 7.8
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +2
Query: 575 TFAARAAVPTTYKFEYCYLLHHYDK---AAQHENPLI 676
TF RA P KF CY++H+ D AA+ ++ LI
Sbjct: 1097 TFVGRALQPVREKFSDCYIIHYIDDILCAAETKDKLI 1133
>AF080234-1|AAC63294.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 30.3 bits (65), Expect = 7.8
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +2
Query: 575 TFAARAAVPTTYKFEYCYLLHHYDK---AAQHENPLI 676
TF RA P KF CY++H+ D AA+ ++ LI
Sbjct: 157 TFVGRALQPVREKFSDCYIIHYIDDILCAAETKDKLI 193
>AF080232-1|AAC63292.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 30.3 bits (65), Expect = 7.8
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +2
Query: 575 TFAARAAVPTTYKFEYCYLLHHYDK---AAQHENPLI 676
TF RA P KF CY++H+ D AA+ ++ LI
Sbjct: 157 TFVGRALQPVREKFSDCYIIHYIDDILCAAETKDKLI 193
>AF080231-1|AAC63291.1| 596|Homo sapiens polymerase protein.
Length = 596
Score = 30.3 bits (65), Expect = 7.8
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +2
Query: 575 TFAARAAVPTTYKFEYCYLLHHYDK---AAQHENPLI 676
TF RA P KF CY++H+ D AA+ ++ LI
Sbjct: 173 TFVGRALQPVREKFSDCYIIHYIDDILCAAETKDKLI 209
>AF080229-1|AAC63290.1| 597|Homo sapiens polymerase protein.
Length = 597
Score = 30.3 bits (65), Expect = 7.8
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +2
Query: 575 TFAARAAVPTTYKFEYCYLLHHYDK---AAQHENPLI 676
TF RA P KF CY++H+ D AA+ ++ LI
Sbjct: 173 TFVGRALQPVREKFSDCYIIHYIDDILCAAETKDKLI 209
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,952,306
Number of Sequences: 237096
Number of extensions: 2112267
Number of successful extensions: 3456
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3456
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9127122082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -