Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00832X
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo...    30   0.28 
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    25   6.1  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    25   6.1  

>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
           Agn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 29.9 bits (64), Expect = 0.28
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 165 GLSRPSTTQATGLQRPQHSAGAGMYFQPGWQSVSQRCSE 49
           G S  ST   + ++ P  SAG  +YF P W S+ Q   E
Sbjct: 135 GYSDVSTGWDSAVKEPLASAGYPIYFVPSWTSLGQGALE 173


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 374 YILSPSRHATGSTLGHHLPGIFSSLSTNCFFTASDTSGQVR 252
           Y+  PS+ A G   G   P I +S++TN    ASD   Q++
Sbjct: 77  YVFVPSKAALGRACGVSRPVISASITTN---EASDLLPQIQ 114


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 162 LSRPSTTQATGLQRPQHSAGAGMYFQPGW 76
           LSRPS  +  G ++   +A  G  F P W
Sbjct: 73  LSRPSFNEVVGHKKFDETASKGDTFGPSW 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,742,420
Number of Sequences: 5004
Number of extensions: 31437
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)