Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00832X
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016432-2|AAB65380.2|  522|Caenorhabditis elegans Hypothetical ...    33   0.15 
AC006809-4|AAO25980.1|  339|Caenorhabditis elegans Activated in ...    30   1.4  
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    29   1.8  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    29   1.8  
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein...    29   3.2  
Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical p...    27   7.4  
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical ...    27   7.4  
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ...    27   7.4  
U00051-11|AAM29695.1|  683|Caenorhabditis elegans Hypothetical p...    27   9.7  
AL032655-2|CAB60457.1|  561|Caenorhabditis elegans Hypothetical ...    27   9.7  

>AF016432-2|AAB65380.2|  522|Caenorhabditis elegans Hypothetical
           protein C07G3.8 protein.
          Length = 522

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
 Frame = +1

Query: 229 DPTSAKLKRTCPEVSEAVKKQFVLKEEKIPGK*CPKVEPVACRDGDKIYQE-----VQVW 393
           DP SAKL  TC   S A+K  + LK      +  P V    C +G  IY E     ++++
Sbjct: 421 DPESAKLSDTCE--SMALKNSYFLKCVAELEEKRPDVSSYRCLNGTDIYSEDLSVQIELF 478

Query: 394 TTPDPCTNRTCRREDGQLSV 453
           TT   C+     +  G+ S+
Sbjct: 479 TTKRGCSRWVMMKHCGEKSM 498


>AC006809-4|AAO25980.1|  339|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 4 protein.
          Length = 339

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 53  EQRCETDCQPGWKYIPAPAECCGRCKPVAC 142
           +  C+  CQ    Y PAP +C   C P AC
Sbjct: 108 QSTCQQSCQASSCYTPAPVQCQPSCMP-AC 136


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
            ATPase protein.
          Length = 2395

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -3

Query: 581  GFLELVVDEAGGLHAAPAAVV-GGGREYVQPRRHCRSQCSTVRPTDSCPSSR 429
            G+   +V   GG    PA  + GGGR YV   RH     S V P    P+++
Sbjct: 2164 GYGSTLVMPRGGRVVRPAGTLPGGGRLYVDHNRHPYPMSSNVVPVRVLPATQ 2215


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
            protein Y111B2A.22 protein.
          Length = 2395

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -3

Query: 581  GFLELVVDEAGGLHAAPAAVV-GGGREYVQPRRHCRSQCSTVRPTDSCPSSR 429
            G+   +V   GG    PA  + GGGR YV   RH     S V P    P+++
Sbjct: 2164 GYGSTLVMPRGGRVVRPAGTLPGGGRLYVDHNRHPYPMSSNVVPVRVLPATQ 2215


>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 376  QEVQVWTTPDPCTNRTCRREDGQL--SVGRTVEHCERQC 486
            + V V    D   NR  R++  QL   + RT+E+CE++C
Sbjct: 2521 RSVHVTGAHDASPNRQVRQQAAQLLTEMRRTIENCEKRC 2559


>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 376  QEVQVWTTPDPCTNRTCRREDGQL--SVGRTVEHCERQC 486
            + V V    D   NR  R++  QL   + RT+E+CE++C
Sbjct: 2521 RSVHVTGAHDASPNRQVRQQAAQLLTEMRRTIENCEKRC 2559


>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
            protein.
          Length = 3674

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 376  QEVQVWTTPDPCTNRTCRREDGQL--SVGRTVEHCERQC 486
            + V V    D   NR  R++  QL   + RT+E+CE++C
Sbjct: 2521 RSVHVTGAHDASPNRQVRQQAAQLLTEMRRTIENCEKRC 2559


>Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical
           protein F07H5.8 protein.
          Length = 872

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
 Frame = +2

Query: 5   YRCVXDGGGGLRSVASEQR-----CETDCQPGWKYI----PAPAECCGRCKPVACV 145
           Y+ +  G  G+ +V    +     C+  C PG   I    PAP  C  +C+P AC+
Sbjct: 370 YQYLSSGSSGISTVPPVTKVCISICQPACDPGCVAIYTTTPAPLHCVSQCQP-ACL 424


>Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 480 TVPARLDVLAPAADHCCGRCVQSAC 554
           T P  L++  P A+ C  RC Q  C
Sbjct: 916 TAPFELNLKVPTAEICAHRCYQDGC 940


>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 480 TVPARLDVLAPAADHCCGRCVQSAC 554
           T P  L++  P A+ C  RC Q  C
Sbjct: 916 TAPFELNLKVPTAEICAHRCYQDGC 940


>Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 480 TVPARLDVLAPAADHCCGRCVQSAC 554
           T P  L++  P A+ C  RC Q  C
Sbjct: 916 TAPFELNLKVPTAEICAHRCYQDGC 940


>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 480 TVPARLDVLAPAADHCCGRCVQSAC 554
           T P  L++  P A+ C  RC Q  C
Sbjct: 916 TAPFELNLKVPTAEICAHRCYQDGC 940


>AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 480 TVPARLDVLAPAADHCCGRCVQSAC 554
           T P  L++  P A+ C  RC Q  C
Sbjct: 916 TAPFELNLKVPTAEICAHRCYQDGC 940


>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 480 TVPARLDVLAPAADHCCGRCVQSAC 554
           T P  L++  P A+ C  RC Q  C
Sbjct: 916 TAPFELNLKVPTAEICAHRCYQDGC 940


>U00051-11|AAM29695.1|  683|Caenorhabditis elegans Hypothetical
           protein F42G9.6b protein.
          Length = 683

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
 Frame = +3

Query: 525 CCGR--CVQSACLVDDQLKE 578
           CCGR  C QS C+V  Q +E
Sbjct: 283 CCGRMRCAQSPCVVQQQRRE 302


>AL032655-2|CAB60457.1|  561|Caenorhabditis elegans Hypothetical
           protein Y6B3B.4 protein.
          Length = 561

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 199 HQLHLRRPARDPTSAKLKRTCPEVSEAVKKQFVLKEEK 312
           H   LR+  ++  ++KLK     V E   KQ  LKE K
Sbjct: 222 HAEELRQQLQEAKASKLKELTSRVEEVRMKQEALKERK 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,702,380
Number of Sequences: 27780
Number of extensions: 220396
Number of successful extensions: 776
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)