Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00831X
(338 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0028 + 19027510-19027983,19028087-19028278,19028369-190285... 29 1.2
01_05_0503 - 22779025-22779397,22779602-22779627 28 2.1
06_03_0487 - 21352955-21353080,21353164-21353357,21353815-213539... 27 2.8
12_02_0710 - 22371771-22372052,22372368-22372580 27 3.8
07_03_0544 + 19309026-19310105 27 3.8
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159... 27 3.8
03_05_0819 + 27948797-27948956,27948976-27949202 27 3.8
08_02_0543 + 18391122-18391471,18391870-18392005,18393529-18393597 27 5.0
04_03_1022 - 21778315-21779007 27 5.0
11_06_0701 + 26407055-26407597,26407794-26409644 26 6.6
06_03_1384 + 29786028-29786657,29788581-29788711,29788987-297890... 26 6.6
06_01_0760 - 5676973-5677830 26 6.6
06_01_0445 + 3144526-3145013,3145493-3145814,3146197-3146445 26 6.6
04_04_1027 - 30216859-30217212,30218769-30219178,30219395-30219800 26 6.6
04_01_0573 + 7436146-7436701,7436786-7437204 26 6.6
03_02_0457 + 8638318-8638336,8640394-8640497,8640613-8640778,864... 26 6.6
02_05_1055 - 33798162-33798290,33798417-33798604,33798707-337987... 26 6.6
01_06_0658 - 30942890-30943054,30943159-30943266,30943448-309435... 26 6.6
11_06_0207 + 21214631-21216121 26 8.7
04_03_0648 - 18393142-18393174,18393259-18393341,18393569-183936... 26 8.7
03_05_0441 + 24350026-24350081,24350186-24351011,24351088-243511... 26 8.7
>02_04_0028 +
19027510-19027983,19028087-19028278,19028369-19028545,
19029568-19029663,19030487-19030618,19030950-19031008,
19031234-19031321,19031433-19031693
Length = 492
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 205 PVYRSFQRDWGASKKSATGYESPG*AGPSEGPRGGATAA 321
P++R + WG+S +AT +PG A + +GG +AA
Sbjct: 54 PLWRPPRWPWGSSSSAATA-AAPGGASTAAAAQGGGSAA 91
>01_05_0503 - 22779025-22779397,22779602-22779627
Length = 132
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 171 LYKQKPFRLTFPTESKYRHHRTAYEIVLIRNTNVARLSN 55
LYK + ++L + E+K+R+ TA IR + LSN
Sbjct: 42 LYKSQEYKLHYTLETKHRNRNTANSKDGIRMAAMENLSN 80
>06_03_0487 -
21352955-21353080,21353164-21353357,21353815-21353973,
21354117-21354242,21354502-21354704,21354892-21355019,
21355323-21355565,21356734-21356928
Length = 457
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = +2
Query: 227 EIGERQRS--QPPDMRAPGELVRARVREGVP 313
E+GE ++ + PDM APGE + + R+G+P
Sbjct: 100 EMGEEIKNGEEGPDMAAPGEEEQEQGRKGIP 130
>12_02_0710 - 22371771-22372052,22372368-22372580
Length = 164
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 337 APPCTQRRWHPLADPRSDQLT 275
APP Q R H L P++DQ+T
Sbjct: 85 APPTDQTRVHGLKGPQADQIT 105
>07_03_0544 + 19309026-19310105
Length = 359
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 241 SKKSATGYESPG*AGPSEGPRGGATAAVCRA 333
+K+S +G +PG GP GGA AAV A
Sbjct: 101 NKRSRSGGAAPGGGVGRGGPGGGAAAAVSSA 131
>07_01_0214 +
1595917-1596526,1597127-1597140,1598414-1598743,
1598853-1598963,1599113-1599269,1603366-1603619,
1603762-1603960,1604341-1604498
Length = 610
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Frame = -2
Query: 316 RWHPLADPRSDQLTRGSHIRWLTSLTLPNL-----VGMNGRLAQSAFIHTVTKTIQTKT 155
+W PL + + G H+R + ++ NL G +G+ A S+F+ T T
Sbjct: 184 QWRPLPTVSENPIFAGGHLRGVKPMSFGNLGGGGGAGGSGKAAASSFLQLPLSTAAAAT 242
>03_05_0819 + 27948797-27948956,27948976-27949202
Length = 128
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/22 (63%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 327 AHSGGGTPSRT--LARTSSPGA 268
A GGG+PSRT LART++P A
Sbjct: 18 AAGGGGSPSRTPRLARTAAPFA 39
>08_02_0543 + 18391122-18391471,18391870-18392005,18393529-18393597
Length = 184
Score = 26.6 bits (56), Expect = 5.0
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Frame = -1
Query: 329 LHTAAVAPPRGP-SLGPAHPGLSYPVA---DFFDAPQSRW 222
LH A + PP+ S P P PVA D F AP RW
Sbjct: 24 LHPALLPPPQSTESSCPDDPSTPGPVARRGDLFAAPLRRW 63
>04_03_1022 - 21778315-21779007
Length = 230
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 326 HTAAVAPPRGPSLGPAHPGLSYP 258
HT A AP GP + P HP +P
Sbjct: 73 HTPAPAPAPGPYIPPHHPHHHHP 95
>11_06_0701 + 26407055-26407597,26407794-26409644
Length = 797
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 145 NISN*VQIQTPPHSVRDSLNTKYERCSF 62
N+ N ++ TPPH++RD + + C F
Sbjct: 603 NVENIFEMLTPPHNLRDLVIGYFFGCRF 630
>06_03_1384 +
29786028-29786657,29788581-29788711,29788987-29789028,
29789383-29789441,29789774-29790070,29790180-29790289,
29790966-29791070,29791201-29791263,29791766-29791933,
29792111-29792248
Length = 580
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 235 GASKKSAT-GYESPG*AGPSEGPRGGAT 315
G+ S T G+++PG A PS P GGA+
Sbjct: 56 GSKSGSTTPGHQTPGVAWPSPYPSGGAS 83
>06_01_0760 - 5676973-5677830
Length = 285
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 235 GASKKSATGYESPG*AGPSEGPRGGATA 318
G+ S +GY G GP GP GG+ A
Sbjct: 171 GSGSGSGSGYGQAGGYGPYYGPYGGSGA 198
>06_01_0445 + 3144526-3145013,3145493-3145814,3146197-3146445
Length = 352
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 329 LHTAAVAPPRGPSLGPAHPGLSYPVADFFDAPQSR 225
+ TAA APPR +L A G+S+ A + P+ R
Sbjct: 1 METAAAAPPRVQALADA--GVSFLPAQYVQPPELR 33
>04_04_1027 - 30216859-30217212,30218769-30219178,30219395-30219800
Length = 389
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 233 GERQRSQPPDMRAPGELVRAR 295
GERQR P + PGE+ RA+
Sbjct: 217 GERQREHPFVVTEPGEVARAK 237
>04_01_0573 + 7436146-7436701,7436786-7437204
Length = 324
Score = 26.2 bits (55), Expect = 6.6
Identities = 20/69 (28%), Positives = 28/69 (40%)
Frame = +2
Query: 113 WCLYLDSVGNVKRKGFCLYSFSDCMDKSRLRQSTVHSNEIGERQRSQPPDMRAPGELVRA 292
W L L N + LY LR +H N+ G+R + P RA E+ A
Sbjct: 152 WLLLLLDESNEIERAHTLYMLWRAW---HLRNEMMHGNKKGKRPMFEEPPARA--EINAA 206
Query: 293 RVREGVPPP 319
+ + PPP
Sbjct: 207 QKMKWEPPP 215
>03_02_0457 +
8638318-8638336,8640394-8640497,8640613-8640778,
8641403-8641467
Length = 117
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 217 SFQRDWGASKKSATGYESPG*AGPSEGPRGG 309
S+++ +G+ KK G PG GP GP GG
Sbjct: 47 SYRKGYGSGKKWDGG---PGGGGPGGGPYGG 74
>02_05_1055 -
33798162-33798290,33798417-33798604,33798707-33798767,
33799045-33799122,33799250-33799472,33799599-33799824,
33799922-33800116,33800210-33800627,33800904-33801182
Length = 598
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -1
Query: 326 HTAAVAPPRGPSLGPAHPGLSYPVADFFDAPQSRWNE 216
HTAA A GP+LG P P F A ++E
Sbjct: 69 HTAAAAAAAGPALGLTKPNAVEPPQVSFAAKDVEFSE 105
>01_06_0658 -
30942890-30943054,30943159-30943266,30943448-30943598,
30943683-30943780,30943869-30944020,30944298-30944403,
30944499-30944588,30944668-30944813,30945396-30945695,
30945953-30946038,30947260-30947996
Length = 712
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = -1
Query: 317 AVAPPRGPSLGPAHPGLSYPVADFFDAPQSRWN 219
AV PP GP+L P PG + WN
Sbjct: 140 AVPPPGGPALRPPRPGAVVALHLLCGCSSGPWN 172
>11_06_0207 + 21214631-21216121
Length = 496
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 207 WRSRLLSIQSLKLYKQKPFRLTFPTESKYRHHRTAYEIV 91
WRS S++ + YKQ+ L + TES Y +V
Sbjct: 86 WRSAYTSLRDMGQYKQQTPCLLYTTESSGEKVSCLYSLV 124
>04_03_0648 -
18393142-18393174,18393259-18393341,18393569-18393662,
18393746-18393880,18394190-18394222,18394302-18394396,
18394494-18394539,18394639-18394719,18395464-18395517,
18395809-18395951,18397645-18397804
Length = 318
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 250 SATGYESPG*AGPSEGPRGGATAAVCR 330
SAT + A P+ PRG A AAV R
Sbjct: 4 SATAGAAAAVASPAVAPRGAAVAAVAR 30
>03_05_0441 +
24350026-24350081,24350186-24351011,24351088-24351189,
24351278-24351343,24351418-24351483,24351594-24351800,
24351925-24352086
Length = 494
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = -1
Query: 320 AAVAPPRGPSLGPAHPGLSYPVADFFDAPQSRWNER*TGAVGFYP 186
AA A PR P + P + P + D + T VG+YP
Sbjct: 403 AAAAMPRMPFMAAPQPVVPTPPVNHLDLGVNHLQPPPTQGVGYYP 447
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,084,812
Number of Sequences: 37544
Number of extensions: 227872
Number of successful extensions: 797
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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