Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00829
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.31 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|...    27   1.9  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    27   1.9  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    25   7.7  

>SPBP8B7.31 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 177

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 280 YSDFRGPIKEGYFPKMDSQVASRAWPPRFAGSFLRDLDRPID 405
           YSD  G ++E    K+   VASR   P++A   L  +  PID
Sbjct: 53  YSDITGILQELRNQKVTLCVASRTCAPKYAKQALNLMKVPID 94


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 600 CCGGHLSMGGLH*WWTIPSGYPARQYQ 520
           CCG +L+    H WW + SG  +R +Q
Sbjct: 639 CCGIYLAS---HLWWQVASGEDSRPFQ 662


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 474 GSDPAQWASNASDEETGIDVLGNLMESSTISVN 572
           GS P +  SNA  E+T +D+   L E++T   N
Sbjct: 454 GSSPTE-ESNALVEDTSVDISATLEEANTQQEN 485


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,915
Number of Sequences: 5004
Number of extensions: 52488
Number of successful extensions: 145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)