Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00829
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80845-5|ABB51196.1|  423|Caenorhabditis elegans Temporarily ass...    28   7.1  
Z82280-5|CAB05266.1|  294|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>U80845-5|ABB51196.1|  423|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 306 protein.
          Length = 423

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 32  PIVIPSNYTASDAEPEQRVAYFXEDIGTNLHHWHWHLVYPF 154
           P V P  +TAS ++P +   +  +  G N H    H V  F
Sbjct: 381 PRVQPPGHTASASDPSKNQPFAQDGTGPNFHPLSQHFVLVF 421


>Z82280-5|CAB05266.1|  294|Caenorhabditis elegans Hypothetical
           protein R05A10.5 protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -2

Query: 150 GYTRCQCQWCRLVPMSSXKYATRCSGSASDA 58
           GY R   QW R     S K    CSG  +DA
Sbjct: 135 GYQRINGQWTRTRKCLSDKAGCPCSGDVTDA 165


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical
           protein T04F3.1 protein.
          Length = 3517

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 141 RCQCQWCRLVPMSSXKYATRCSGS 70
           +CQC  CRL+ MS  + A R   S
Sbjct: 729 KCQCNACRLIRMSEAERAVRIERS 752


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical
           protein T04F3.1 protein.
          Length = 3517

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 141 RCQCQWCRLVPMSSXKYATRCSGS 70
           +CQC  CRL+ MS  + A R   S
Sbjct: 729 KCQCNACRLIRMSEAERAVRIERS 752


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,684,836
Number of Sequences: 27780
Number of extensions: 311556
Number of successful extensions: 854
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)