Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00828
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...   118   5e-28
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    27   2.2  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   3.8  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    26   5.0  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    26   5.0  

>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score =  118 bits (285), Expect = 5e-28
 Identities = 54/84 (64%), Positives = 66/84 (78%)
 Frame = +1

Query: 1   VLYPCDENLIDYMKWRQADVHINNLYNTTFWTLILKGQLTPVQAEKRLSGTVSADKNEIL 180
           VLYP  + L DY+ WRQ D HINNLYNTTFW LILKG  T  QAE+ L GTVSA+K+EIL
Sbjct: 131 VLYPNMKVLRDYLHWRQVDCHINNLYNTTFWMLILKGGFTNTQAEEYLKGTVSAEKHEIL 190

Query: 181 FQEFNMNYNNEPEIFKRGTILLRK 252
           F +F +NYN EPEI+K+G+I +R+
Sbjct: 191 FSKFGINYNFEPEIYKKGSIWIRE 214


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +1

Query: 16  DENLIDYMKWRQADVHINNLYNTTFWTLILKGQLTPVQAEKRLSGTVSADKNEILFQEF 192
           +EN   +    ++D+ INNL  T F +++     +P   E  L    +   N  +F  F
Sbjct: 117 EENFDFWKSQYRSDILINNLTETLFESIVPDTTNSPFSTEAFLQAVENGHLNHEMFTSF 175


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 73  NYLCVHQPVSTSYNLLN 23
           N+LCV +P  TS NL N
Sbjct: 319 NFLCVEEPFHTSRNLAN 335


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 21/69 (30%), Positives = 35/69 (50%)
 Frame = +3

Query: 237 NSIAKVILHNKVNKSIIVDVHDDMLKDKFWKENIYILSVKKSKQNLMYIGPTTEIIEDQL 416
           N  A  +L ++ N+ + VD   D L+  F +++  ILS++K  +NL         I ++L
Sbjct: 686 NESASELLKSR-NEKLCVDY--DKLRSVFEEDSSKILSLQKENENLQ---SQILQISEEL 739

Query: 417 SKYESHLEA 443
             Y S  EA
Sbjct: 740 VDYRSRCEA 748


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 544 ILNFVFDVKHQLS*KIRLPNLKKK 615
           I NFVFD + QL    R PN +K+
Sbjct: 383 IFNFVFDEQGQLRSAFRNPNSRKR 406


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,309,803
Number of Sequences: 5004
Number of extensions: 45816
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)