Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00826X
(558 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.61
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 28 1.1
SPCC1739.05 |set5||histone lysine methyltransferase Set5 |Schizo... 27 1.4
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 27 1.9
SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|... 27 1.9
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 4.3
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 25 5.7
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 5.7
SPBC2A9.02 |||NAD dependent epimerase/dehydratase family protein... 25 7.5
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 25 10.0
>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 527
Score = 28.7 bits (61), Expect = 0.61
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +3
Query: 111 NRIQKNKIISAHIGFNCYTTIYGSKVNLFRKIHHTIIKMQSSINHYVITPIVF 269
N I K+ H +T I SK N + +H T K+Q I+ + +TP ++
Sbjct: 478 NAIHSRKVPVTHT----FTYILISKTNRWNSLHDTKAKIQRFIDQFDLTPTLY 526
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 27.9 bits (59), Expect = 1.1
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = -2
Query: 245 VINATLHLNDSMVYFSKKVNFTSIYCCIAVKPNVGRNNFVFLYSIT*SNKQN 90
+I + +N V+ S++++ T I VK + +NN VF++S +NK N
Sbjct: 511 IIYLSFGVNKLSVWNSERISHTLELQDILVKLSTPKNNDVFIFSSKITNKLN 562
>SPCC1739.05 |set5||histone lysine methyltransferase Set5
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 319
Score = 27.5 bits (58), Expect = 1.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 120 QKNKIISAHIGFNCYTTIYGSKVNLFRKI 206
++ KI+ H GF CY ++ + RKI
Sbjct: 149 ERQKILLEHFGFKCYCSVCSVEERKIRKI 177
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 27.1 bits (57), Expect = 1.9
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 253 LRLLYSR*IVEAFRLIYFIVLIRNIN*YILLVLELFFALNISKIP 387
+RLLYS + R Y +++ NI + L+LE N+S +P
Sbjct: 94 MRLLYSPGFSQVVRKQYRVMIFENIISSLCLLLEAMDNSNVSLLP 138
>SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 264
Score = 27.1 bits (57), Expect = 1.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -2
Query: 509 FTDVLWPEFTIWNLF 465
F D WP+F+IW F
Sbjct: 237 FIDFYWPDFSIWKFF 251
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 4.3
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -2
Query: 383 IFEIFRAKKSSRTNKIY*LMFRINTMKYIKRNASTI*REYNRRNHIVINATL 228
IF++F + T+KIY + + K+IKR A + +H+VI+ L
Sbjct: 318 IFDLFSQRSFLATSKIYRRLCLRDFYKFIKRVAFLYHKFMIPSDHVVISQEL 369
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.4 bits (53), Expect = 5.7
Identities = 14/59 (23%), Positives = 25/59 (42%)
Frame = -3
Query: 514 LYSRMYCGQNSRFGIYLAAIIHFQRNAPPIKAEDTNETAHEKKEFLKYLEQRRAQELTK 338
LY R Y S G+ ++ +++N + E + AH + L + + EL K
Sbjct: 1204 LYERYYLITRSFIGVAALQLLFYKKNISEFEREKVEDVAHWAQSSLSEMAKCFHAELYK 1262
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 5.7
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -2
Query: 356 SSRTNKIY*LMFRINTMKYIKRNASTI*REYNRRN 252
SS+TNK L + N +KYI++N + E ++RN
Sbjct: 1062 SSQTNKS--LEDKTNQLKYIEKNVQKLLDEKDQRN 1094
>SPBC2A9.02 |||NAD dependent epimerase/dehydratase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 25.0 bits (52), Expect = 7.5
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +3
Query: 96 FV*LCNRIQKNKIISAHI--GFNCYTTIYGS-KVNLF 197
FV + + KNK +SA+I G NC+ ++ + NLF
Sbjct: 168 FVPMLINVAKNKGVSAYIGNGMNCWPAVHRTDAANLF 204
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 24.6 bits (51), Expect = 10.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 445 QRNAPPIKAEDTNETAHEKKEFLKYLEQRRAQELTKY 335
QRN + TNET + ++FL Q R Q TK+
Sbjct: 142 QRNVSKTLPQSTNETIEKLRQFL----QTRYQPATKF 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,047,889
Number of Sequences: 5004
Number of extensions: 39850
Number of successful extensions: 92
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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