Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00825X
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    29   0.50 
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.50 
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    28   0.87 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.0  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.0  
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    27   2.0  
SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr...    27   2.7  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    26   4.7  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    26   4.7  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    26   4.7  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    25   6.2  

>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 29.1 bits (62), Expect = 0.50
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 415 PASPTYQNTSSFHSEKMTPHKYTSTVQSNYSTT 513
           PA+P+ QN+ S H  +M PH      Q   S T
Sbjct: 460 PAAPSIQNSLSVHESEMPPHVTRDYTQPAASAT 492


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 29.1 bits (62), Expect = 0.50
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = +1

Query: 379 NGSRNISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNY-STTRPVTT---WDNRQA 546
           + S + SS  +  +S +   +SS  S + T H+ TS   S+Y  T  P TT   ++   A
Sbjct: 148 SSSSSSSSSSSSKSSSSSSKSSSRSSSRTTSHRTTSHKSSSYRPTVFPYTTISHYNITNA 207

Query: 547 TAGPVVEGT 573
           T G    GT
Sbjct: 208 TNGTYCNGT 216


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 140 VFHYTNTNNKWHSWTAKYV*MSKKLLVN 57
           V++Y+   N WH W   ++  ++K LV+
Sbjct: 12  VYNYSKRKNYWHFWLRSFMSNNRKFLVH 39


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 17/50 (34%), Positives = 29/50 (58%)
 Frame = +1

Query: 379 NGSRNISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSTTRPVTT 528
           + S  ISS  + P+S ++ +T+S  S K +   ++STV S+ ST+    T
Sbjct: 338 SSSSTISSSSSSPSSSSFSSTTS--SSKSSS-SFSSTVSSSSSTSSSTLT 384


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 412 KPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSTTRPVTT 528
           KPA+ T +N      +  TP K T++ + + S+ +PV T
Sbjct: 259 KPAAGTVKNVMQAFLQPATPAKDTASKEPSKSSQQPVRT 297


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +1

Query: 412 KPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSTTRPVTTWDNRQ 543
           KPA+P   +T  +  E ++P++   T+++  +    V  W N++
Sbjct: 168 KPAAPNSLSTIIYPIEGLSPYQNKWTIRARVTNKSEVKHWHNQR 211


>SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 239

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +1

Query: 376 INGSRNISSDYAKPASPTYQNTSSFHSEKMTPHK---YTSTVQSNYSTTRPVT 525
           I G   I S+ + P    + +   ++  K TP     Y+  VQS Y   RPVT
Sbjct: 80  IKGLCQICSN-SHPDDSAWNSNDPYYDPKSTPQNPRWYSVGVQSEYKLDRPVT 131


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 104 CAICYLC*CSEKLNLKSEENM 166
           C++CYLC  ++ LN  S +++
Sbjct: 466 CSLCYLCLYAQNLNSHSSQSL 486


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = +1

Query: 430 YQNTSSFHSEKMTPHKYTSTVQSNYSTTRPVTTWDNRQATAGPV 561
           YQ T + HS+   P K         STT+P+      +  A  +
Sbjct: 26  YQQTGNGHSDLSIPEKKLKEDVDQVSTTKPIEAVPKMKTNASKI 69


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 582 ARSGSLDHRSCRSLAIVPRCNRACGTVVA 496
           A+S + DHR+  S+ +VP  NR  G V A
Sbjct: 38  AQSATNDHRNVESIKVVPE-NRVRGGVAA 65


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 391 NISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSN--YSTTRPVTTWDN 537
           N+S+  +   S +Y +T+S    ++T H+   T+  N  +++ RP+ +  N
Sbjct: 612 NVSAGPSSVRSSSYNSTASESKSEITSHQNLHTIPINKPFTSDRPLYSSPN 662


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,175,764
Number of Sequences: 5004
Number of extensions: 39325
Number of successful extensions: 130
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)