Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00825X
(585 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC036528-1|AAH36528.1| 299|Homo sapiens chromosome 5 open readi... 31 4.0
D67035-1|BAA22586.1| 973|Homo sapiens SCP-1 protein. 30 5.2
BC126266-1|AAI26267.1| 976|Homo sapiens synaptonemal complex pr... 30 5.2
AL645502-1|CAH70064.1| 976|Homo sapiens synaptonemal complex pr... 30 5.2
AL358372-2|CAH72847.1| 976|Homo sapiens synaptonemal complex pr... 30 5.2
X52022-1|CAA36267.1| 3176|Homo sapiens collagen type VI, alpha 3... 30 6.9
BX641155-1|CAE46068.1| 558|Homo sapiens hypothetical protein pr... 30 6.9
BC033174-1|AAH33174.1| 979|Homo sapiens Similar to collagen, ty... 30 6.9
AC112715-1|AAY14906.1| 588|Homo sapiens unknown protein. 30 6.9
AB209636-1|BAD92873.1| 1702|Homo sapiens alpha 3 type VI collage... 30 6.9
X95654-1|CAA64956.1| 976|Homo sapiens polypeptide of 976 aa pro... 29 9.1
>BC036528-1|AAH36528.1| 299|Homo sapiens chromosome 5 open reading
frame 35 protein.
Length = 299
Score = 30.7 bits (66), Expect = 4.0
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = +3
Query: 435 KHKLIPLREDDSAQIYEYRPKQLQYHTPGYNVGQSPGYGRTGGRG 569
+H+ + LRE+ Q ++P+++ Y T G++V Q+ + G+G
Sbjct: 93 EHQGVKLRENRHQQQSTFKPEEILYKTLGFSVAQATSSLISAGKG 137
>D67035-1|BAA22586.1| 973|Homo sapiens SCP-1 protein.
Length = 973
Score = 30.3 bits (65), Expect = 5.2
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 368 TDPSMDLGILARIMQN-LLRQLTKTQAHSTQRR*LRTNIRVPSKATTVPHARLQRGTIAR 544
+D S +L+ + + L+ L + ++T + PS TT P + L+ G I +
Sbjct: 889 SDSSETTDLLSMVSEEETLKTLYRNNNPPASHLCVKTPKKAPSSLTT-PGSTLKFGAIRK 947
Query: 545 LRQDRWS 565
+R+DRW+
Sbjct: 948 MREDRWA 954
>BC126266-1|AAI26267.1| 976|Homo sapiens synaptonemal complex protein
1 protein.
Length = 976
Score = 30.3 bits (65), Expect = 5.2
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 368 TDPSMDLGILARIMQN-LLRQLTKTQAHSTQRR*LRTNIRVPSKATTVPHARLQRGTIAR 544
+D S +L+ + + L+ L + ++T + PS TT P + L+ G I +
Sbjct: 892 SDSSETTDLLSMVSEEETLKTLYRNNNPPASHLCVKTPKKAPSSLTT-PGSTLKFGAIRK 950
Query: 545 LRQDRWS 565
+R+DRW+
Sbjct: 951 MREDRWA 957
>AL645502-1|CAH70064.1| 976|Homo sapiens synaptonemal complex protein
1 protein.
Length = 976
Score = 30.3 bits (65), Expect = 5.2
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 368 TDPSMDLGILARIMQN-LLRQLTKTQAHSTQRR*LRTNIRVPSKATTVPHARLQRGTIAR 544
+D S +L+ + + L+ L + ++T + PS TT P + L+ G I +
Sbjct: 892 SDSSETTDLLSMVSEEETLKTLYRNNNPPASHLCVKTPKKAPSSLTT-PGSTLKFGAIRK 950
Query: 545 LRQDRWS 565
+R+DRW+
Sbjct: 951 MREDRWA 957
>AL358372-2|CAH72847.1| 976|Homo sapiens synaptonemal complex protein
1 protein.
Length = 976
Score = 30.3 bits (65), Expect = 5.2
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 368 TDPSMDLGILARIMQN-LLRQLTKTQAHSTQRR*LRTNIRVPSKATTVPHARLQRGTIAR 544
+D S +L+ + + L+ L + ++T + PS TT P + L+ G I +
Sbjct: 892 SDSSETTDLLSMVSEEETLKTLYRNNNPPASHLCVKTPKKAPSSLTT-PGSTLKFGAIRK 950
Query: 545 LRQDRWS 565
+R+DRW+
Sbjct: 951 MREDRWA 957
>X52022-1|CAA36267.1| 3176|Homo sapiens collagen type VI, alpha 3
chain protein.
Length = 3176
Score = 29.9 bits (64), Expect = 6.9
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +1
Query: 403 DYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSN-YSTTRPVTTWDNRQATAGPVVEGT 573
D+ + PT H + P+ TS+ SN +TT+PVTT T PV T
Sbjct: 2837 DWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTTKPVTTTT 2894
>BX641155-1|CAE46068.1| 558|Homo sapiens hypothetical protein
protein.
Length = 558
Score = 29.9 bits (64), Expect = 6.9
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +1
Query: 403 DYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSN-YSTTRPVTTWDNRQATAGPVVEGT 573
D+ + PT H + P+ TS+ SN +TT+PVTT T PV T
Sbjct: 218 DWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTTKPVTTTT 275
>BC033174-1|AAH33174.1| 979|Homo sapiens Similar to collagen, type
VI, alpha 3 protein.
Length = 979
Score = 29.9 bits (64), Expect = 6.9
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +1
Query: 403 DYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSN-YSTTRPVTTWDNRQATAGPVVEGT 573
D+ + PT H + P+ TS+ SN +TT+PVTT T PV T
Sbjct: 639 DWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTTKPVTTTT 696
>AC112715-1|AAY14906.1| 588|Homo sapiens unknown protein.
Length = 588
Score = 29.9 bits (64), Expect = 6.9
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +1
Query: 403 DYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSN-YSTTRPVTTWDNRQATAGPVVEGT 573
D+ + PT H + P+ TS+ SN +TT+PVTT T PV T
Sbjct: 248 DWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTTKPVTTTT 305
>AB209636-1|BAD92873.1| 1702|Homo sapiens alpha 3 type VI collagen
isoform 5 precursor variant protein.
Length = 1702
Score = 29.9 bits (64), Expect = 6.9
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +1
Query: 403 DYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSN-YSTTRPVTTWDNRQATAGPVVEGT 573
D+ + PT H + P+ TS+ SN +TT+PVTT T PV T
Sbjct: 1362 DWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTTKPVTTTT 1419
>X95654-1|CAA64956.1| 976|Homo sapiens polypeptide of 976 aa protein.
Length = 976
Score = 29.5 bits (63), Expect = 9.1
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 368 TDPSMDLGILARIMQN-LLRQLTKTQAHSTQRR*LRTNIRVPSKATTVPHARLQRGTIAR 544
+D S +L+ + + L+ L + ++T + PS TT P L+ G I +
Sbjct: 892 SDSSETTDLLSMVSEEETLKTLYRNNNPPASHLCVKTPKKAPSSLTT-PGPTLKFGAIRK 950
Query: 545 LRQDRWS 565
+R+DRW+
Sbjct: 951 MREDRWA 957
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,552,274
Number of Sequences: 237096
Number of extensions: 1614500
Number of successful extensions: 4331
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4328
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6098631048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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