Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00825X
         (585 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   5.1  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   5.1  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   5.1  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   5.1  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   5.1  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   5.1  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   5.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   6.7  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   8.9  

>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 394 ISSDYAKPASPTYQNTSSFHS 456
           ISS+  +  S ++Q TSS HS
Sbjct: 212 ISSNSLRSRSRSFQRTSSCHS 232


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 394 ISSDYAKPASPTYQNTSSFHS 456
           ISS+  +  S ++Q TSS HS
Sbjct: 212 ISSNSLRSRSRSFQRTSSCHS 232


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 394 ISSDYAKPASPTYQNTSSFHS 456
           ISS+  +  S ++Q TSS HS
Sbjct: 212 ISSNSLRSRSRSFQRTSSCHS 232


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 394 ISSDYAKPASPTYQNTSSFHS 456
           ISS+  +  S ++Q TSS HS
Sbjct: 212 ISSNSLRSRSRSFQRTSSCHS 232


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 394 ISSDYAKPASPTYQNTSSFHS 456
           ISS+  +  S ++Q TSS HS
Sbjct: 212 ISSNSLRSRSRSFQRTSSCHS 232


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 394 ISSDYAKPASPTYQNTSSFHS 456
           ISS+  +  S ++Q TSS HS
Sbjct: 212 ISSNSLRSRSRSFQRTSSCHS 232


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 394 ISSDYAKPASPTYQNTSSFHS 456
           ISS+  +  S ++Q TSS HS
Sbjct: 212 ISSNSLRSRSRSFQRTSSCHS 232


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 276 PGQNWVSSRQRHFTGPSQLVRQPE 347
           PG   V+S Q+H  G   +  QP+
Sbjct: 919 PGSGIVASGQQHAGGWQSIYAQPQ 942


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 430 YQNTSSFHSEKMTPHKYTSTVQSNYSTTRPVTTWDNRQATAG 555
           ++  SS   +     +  +T+Q N   TR  +T  N+Q T G
Sbjct: 274 FRTASSTPEDLQDLEEPLTTIQHNNCLTRIPSTRINKQHTRG 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,369
Number of Sequences: 438
Number of extensions: 3016
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)