Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00823X
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68214-1|CAA92444.1|  846|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF067948-6|AAC17701.1|  337|Caenorhabditis elegans Seven tm rece...    28   4.0  
Z83239-1|CAB05807.1|  325|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z82277-1|CAB05248.1|  648|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z71267-9|CAA95852.2|  380|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z71262-14|CAN99672.1|  380|Caenorhabditis elegans Hypothetical p...    27   7.0  
U12921-1|AAB60256.1|  648|Caenorhabditis elegans sex determinati...    27   7.0  
Z83216-2|CAB05673.1|  315|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>Z68214-1|CAA92444.1|  846|Caenorhabditis elegans Hypothetical
           protein C10C5.1 protein.
          Length = 846

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +2

Query: 215 MAISVTFIFFARASILFAC--AWRFLFHELSGLLFSVFN*ILVILRIT 352
           M   +TF+ F   SI       W  L+H + GL+  +   IL I R T
Sbjct: 499 MIAVMTFVIFHSYSIALTAMMTWALLYHSIFGLILLILTCILWIFRDT 546


>AF067948-6|AAC17701.1|  337|Caenorhabditis elegans Seven tm
           receptor protein 30 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 335 VILRITLPTMCFYFIL*ICKMLHYFAMRNNRWTSCINCSICVY 463
           +I +IT PT  FY    +   + +F ++ N  T  I CS  +Y
Sbjct: 247 LIYQITSPTFTFYIPAILILTVPFFDLKFNLPTGLIVCSFSIY 289


>Z83239-1|CAB05807.1|  325|Caenorhabditis elegans Hypothetical
           protein T09F5.1 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 194 VTGYLQDDRFVKKMYFL*IYSYPIPANIIRVFYHNLI 84
           +TG + DD  VK++    I+ +P P N     +HN +
Sbjct: 271 ITGQMADDAGVKRINLPMIHMFPEPTNDFVFAWHNTL 307


>Z82277-1|CAB05248.1|  648|Caenorhabditis elegans Hypothetical
           protein LLC1.1 protein.
          Length = 648

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 540 HPIYISAYYSTVYIYIHMSSIN*GIQYTHILQFIQDVQRLFLI 412
           HPI IS Y S   +Y+H+ S+  G        F    Q LF++
Sbjct: 456 HPIAISDYASGRSVYLHLQSLPRGRYLLIPTTFAPKEQTLFML 498


>Z71267-9|CAA95852.2|  380|Caenorhabditis elegans Hypothetical
           protein W01A8.6 protein.
          Length = 380

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 212 WIVSITVTGYLQDDRFVKKMYFL*IYSYPI 123
           + +   V GYL DD+  K +  L IY +P+
Sbjct: 107 YFIEKLVNGYLSDDKITKYVETLDIYVFPV 136


>Z71262-14|CAN99672.1|  380|Caenorhabditis elegans Hypothetical
           protein W01A8.6 protein.
          Length = 380

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 212 WIVSITVTGYLQDDRFVKKMYFL*IYSYPI 123
           + +   V GYL DD+  K +  L IY +P+
Sbjct: 107 YFIEKLVNGYLSDDKITKYVETLDIYVFPV 136


>U12921-1|AAB60256.1|  648|Caenorhabditis elegans sex determination
           protein.
          Length = 648

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 540 HPIYISAYYSTVYIYIHMSSIN*GIQYTHILQFIQDVQRLFLI 412
           HPI IS Y S   +Y+H+ S+  G        F    Q LF++
Sbjct: 456 HPIAISDYASGRSVYLHLQSLPRGRYLLIPTTFAPKEQTLFML 498


>Z83216-2|CAB05673.1|  315|Caenorhabditis elegans Hypothetical
           protein C08F11.2 protein.
          Length = 315

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +2

Query: 203 KQSNMAISVTFIFFARASILFACAWRFLFHELSG--LLFSVFN*ILVILRITLPTM 364
           K +N+      I+F +   +F CA R   +ELSG   + +V   + +I+   +PT+
Sbjct: 224 KVNNLIYQFFPIYFVQMLYIFTCAVRIFTYELSGHDSIEAVMQCVNMIVPYLIPTI 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,149,354
Number of Sequences: 27780
Number of extensions: 282608
Number of successful extensions: 660
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)