Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00822
         (427 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    33   0.13 
12_01_0549 + 4396159-4397327,4397341-4398353,4398609-4398676,439...    27   4.8  
03_01_0032 + 300759-301988                                             27   6.3  
05_03_0580 + 15730927-15731271,15731353-15731937                       27   8.3  
05_01_0201 - 1441063-1443836,1444658-1445758,1446367-1447179,144...    27   8.3  
04_04_0714 + 27496678-27497392,27499080-27499138,27499179-27499370     27   8.3  
03_05_0353 + 23410354-23410485,23410678-23411089,23411304-23411332     27   8.3  

>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 8   GAFVLKRCTGVRIPQAGTNFSNEICTQQMFTIDFHGE 118
           G  ++ RCTGV I   G N   +I T      DFHGE
Sbjct: 153 GGGLISRCTGVVIGWDGANKRAKILTAASVVCDFHGE 189


>12_01_0549 +
           4396159-4397327,4397341-4398353,4398609-4398676,
           4399229-4399291
          Length = 770

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -2

Query: 213 GTYPRGLTRGPTTSNYANYNFA-GLIFNHDVIPSPWKSIV 97
           G Y RG+TR    +    +N      F HD IPSP   IV
Sbjct: 228 GAYNRGVTRCFKRNKNPEWNETFAFSFQHDKIPSPTVDIV 267


>03_01_0032 + 300759-301988
          Length = 409

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 187 SCESARIGT-TALLISAVKQ*CVSFEGWGSRCNYTETLELVSQGGW 321
           SC    I + T+L ++     C+S +G G+ C  T +   +  G W
Sbjct: 224 SCSRPEISSYTSLTVNGDPHICISIDGVGTYCLNTASHTWIKVGNW 269


>05_03_0580 + 15730927-15731271,15731353-15731937
          Length = 309

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 178 GRTSCESARIGTTALLISAVKQ*CVSFEG 264
           G T+CE+A  G  A+L + V   CVS  G
Sbjct: 137 GATACEAATAGQMAVLYAGVFLLCVSSAG 165


>05_01_0201 -
           1441063-1443836,1444658-1445758,1446367-1447179,
           1447386-1447440
          Length = 1580

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 279 TTATPPFKRNALLLHGRNKQGGGTYPR 199
           TTATP  ++      G  +QGGG+Y R
Sbjct: 5   TTATPSHRQPPRRRDGYYRQGGGSYDR 31


>04_04_0714 + 27496678-27497392,27499080-27499138,27499179-27499370
          Length = 321

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -1

Query: 349 AHRHLQRRRATHLEIQVLKSQYSYNGYPTLQTKRITASRQK*AGRWYLSARTHKR 185
           AH HL      +  ++VLKS  + +G   +  +R+  S +   G W   +R H R
Sbjct: 243 AHLHLGICENHYFCMRVLKSLEAAHGSSRVGAERLADSPESGNGHWIHPSRHHHR 297


>03_05_0353 + 23410354-23410485,23410678-23411089,23411304-23411332
          Length = 190

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 265 WGSRCNYTETLELVSQGGWRVYVVDVYGLQ 354
           W     Y++T ELV + GW+ + VD  G+Q
Sbjct: 72  WSIGVAYSDTGELVLRSGWKEF-VDANGVQ 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,733,519
Number of Sequences: 37544
Number of extensions: 269479
Number of successful extensions: 576
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)