Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00821
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    29   0.55 
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    29   0.72 
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    27   2.9  
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe...    25   8.9  
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...    25   8.9  

>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +2

Query: 74  VLVLYEFFRKNSNTNSLRITNIFTYMRY*LAATQRFSID*KQ*CQLLGSAHQFNK 238
           ++ LY FF    +T  ++   +   M      TQ+      Q  QL G AH+FN+
Sbjct: 46  LIYLYSFFSSGVHTRGIQFYRVSAVMELLQQWTQQAKAALTQARQLCGDAHKFNE 100


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 452 NCSELHIKRSV*CLLSILNLSFVGIENFHFFLHSGS 345
           NC+ +H+KR+    L  +N SF+  E  ++    GS
Sbjct: 308 NCTRVHLKRTSPSELDYINASFIKTETSNYIACQGS 343


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +1

Query: 265 LQNHMILHLIA*CVQKSKIHYIIMSNSL--PLCKKKWKFSIPTKLKFKIDNRH 417
           + + + L+ I+   +   +H +++   +  P  K+ W+F+    L F ++N H
Sbjct: 20  IDSPIFLNKISALPESENVHCLLLKQLIGSPQLKQTWQFNFCVDLNFLLENMH 72


>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 248

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 543 LIIFHFELRRDYI 581
           LI++HF LR+DY+
Sbjct: 109 LIVYHFFLRKDYV 121


>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 377 ENFHFFLHSGSEFDIIM*CIFDFCTHYAIK 288
           ENFH     G   +    C+++   H+A+K
Sbjct: 68  ENFHILFMQGGGTEQFAACLYNVYAHHALK 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,210,235
Number of Sequences: 5004
Number of extensions: 43812
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)