Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00821
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0021 - 143576-143932,144434-144667,144988-145066,145138-14...    30   1.3  
01_06_0847 + 32411521-32411619,32411737-32411851,32412292-324123...    28   5.2  

>11_01_0021 -
           143576-143932,144434-144667,144988-145066,145138-145253,
           145717-145861,146048-146465,147206-147869
          Length = 670

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 247 VSVHNQLQNHMILHLIA*CVQKSKIHYIIMSNSLPLCKKK 366
           ++ HN L NH++ H     +  +K H+    ++LP  K K
Sbjct: 86  IAFHNLLDNHLLHHFHTLLIHANKPHFDAFLSNLPFAKLK 125


>01_06_0847 +
           32411521-32411619,32411737-32411851,32412292-32412375,
           32412430-32413478,32414690-32416371,32416477-32416586,
           32417634-32418430,32418839-32418951,32419147-32419194,
           32419425-32419652,32419732-32419829,32419967-32420019
          Length = 1491

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 216 VQHTNLTSHKCQRT*SASKSHDFTFNSIMCTEVKNTLHNYVKLTPAV*E 362
           ++ T+  S K +R     K+HD T N I+C++ ++ +     + P V E
Sbjct: 624 LKSTDCLSSKHKRLHLEMKAHDSTSNGILCSDDRSRVQQGSSIMPVVNE 672


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,634,903
Number of Sequences: 37544
Number of extensions: 230989
Number of successful extensions: 312
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)