Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00821
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   1.8  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   2.4  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    23   2.4  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   2.4  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 237 SHKCQRT*SASKSHDFTFNSIMC 305
           SH C+   + SKS D+ F    C
Sbjct: 276 SHSCEACPAHSKSSDYGFTECRC 298


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 473 RHQTEMRLIT*QRSPNYVMSLKKTNHFSF*IKKRLYNMKAIE 598
           R +++ R I    S NY+ ++   N+ +   KK  YN+  IE
Sbjct: 73  RERSKERKIISSLSNNYISNISNYNNNNNYNKKLYYNINYIE 114


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 473 RHQTEMRLIT*QRSPNYVMSLKKTNHFSF*IKKRLYNMKAIE 598
           R +++ R I    S NY+ ++   N+ +   KK  YN+  IE
Sbjct: 73  RERSKERKIISSLSNNYISNISNYNNDNNYNKKLYYNINYIE 114


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 473 RHQTEMRLIT*QRSPNYVMSLKKTNHFSF*IKKRLYNMKAIE 598
           R +++ R I    S NY+ ++   N+ +   KK  YN+  IE
Sbjct: 311 RERSKERKIISSLSNNYISNISNYNNNNNYNKKLYYNINYIE 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,065
Number of Sequences: 438
Number of extensions: 2754
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)