Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00820
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   3.6  
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom...    26   3.6  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   4.7  
SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated pro...    25   8.3  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    25   8.3  

>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = -1

Query: 374 SENLCLLSRQPQSQPALLFLRSIISKFVNAKRSMWILLVQ 255
           SE      R  ++Q ALL L  I SKF N   + W LLVQ
Sbjct: 858 SELSVRFGRDFRAQLALLVLFWISSKFGNIIDASWPLLVQ 897


>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = -2

Query: 259 FNGLSLPSFS*MIDNAALCRHH---PCIPC 179
           +N ++L  +  ++DN A+CR+H    CI C
Sbjct: 26  WNAVALWQWDIVVDNCAICRNHIMDLCIEC 55


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 335 QPALLFLRSIISKFVNAKRSMWILLVQWFISAKFFLN 225
           Q AL+    II+  + A  S  +LL+ W +   FF N
Sbjct: 330 QQALVVASIIINSHLLATNSNGMLLLTWLLDNSFFRN 366


>SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated
           protein Moa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 172

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = +2

Query: 116 LRDIMTSIKPKNCSRVSSKNITGNTRMMPTESCIINHSRKTWQR*TIEREESTYY 280
           L+ + TS  PK+C R  S      T     +  ++++ + T  + +I R+ + Y+
Sbjct: 94  LKPVATST-PKSCMRTGSNLFLNETVKHVPDERLVSNIKNTQTKDSITRDSAYYH 147


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -1

Query: 377 KSENLCLLSRQP-QSQPALLFLRSIISKFVNAK 282
           +SE++ LL R+    +  LL+LR +ISK + +K
Sbjct: 384 RSESVELLKRESFLLKKVLLYLRDVISKLLKSK 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,902,119
Number of Sequences: 5004
Number of extensions: 36260
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)