Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00819
         (478 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    31   0.091
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   4.5  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    25   4.5  
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c...    25   5.9  
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    25   7.9  

>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 31.1 bits (67), Expect = 0.091
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 244 CCKHHRRGKLGISARKGVN*KYTC-IDASLEL 336
           C KHHR   +G++ R+G N  ++C  D S+++
Sbjct: 245 CWKHHRDAVMGLAMRRGTNEMFSCSADRSIKV 276


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +1

Query: 136 SNRLNKFFVMIFYTRTEFLKAELSGLQ 216
           S +L KFF   FY  TE   A L  LQ
Sbjct: 225 SEQLLKFFEFFFYAYTEETDAHLPALQ 251


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 167 YFIQEPNFSRQSCRDYKL 220
           Y++ +P F +QSC D KL
Sbjct: 798 YYVVDPGFVKQSCFDPKL 815


>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 169

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -2

Query: 264 SSVVFTTENTSANISSL*SRQLCLEKFGSCIKYHNKKLIQ 145
           +S+    E+ ++ ISS+ S++  LE+F +  +   K L+Q
Sbjct: 81  NSINAELESVNSKISSISSQEYALEEFQALSQNFEKNLVQ 120


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +3

Query: 366 YFTDINSLVYLTVDIVIDIYVD 431
           Y+TDINS  ++++ +V+ I V+
Sbjct: 183 YWTDINSAAWISIFLVVIIIVN 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,656,846
Number of Sequences: 5004
Number of extensions: 29966
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)