Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00819
         (478 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0907 - 25851673-25852368,25853531-25853585,25853973-258540...    28   3.4  
09_04_0452 - 17710180-17710968                                         27   7.8  

>06_03_0907 -
           25851673-25852368,25853531-25853585,25853973-25854068,
           25854170-25854435
          Length = 370

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +1

Query: 61  FIFVIKGAFYLVSASTVRLQLSLLHSNRLNKFFVMIFYT 177
           F+F+    F L+S++   L LS  HS+RLN F + + YT
Sbjct: 175 FVFLAGAMFCLLSSAACHL-LSC-HSHRLNLFLIRLDYT 211


>09_04_0452 - 17710180-17710968
          Length = 262

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 186 ISQGRAVGTTNLRYWQRYFLL 248
           +S+ R  G TN +YW  +FL+
Sbjct: 173 VSKDRPAGVTNGKYWMGFFLI 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,496,927
Number of Sequences: 37544
Number of extensions: 158239
Number of successful extensions: 281
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)