Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00819
         (478 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidan...    27   5.3  
DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagella...    27   5.3  
AF038608-4|AAU05594.2|  310|Caenorhabditis elegans Serpentine re...    27   7.0  
AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical...    27   9.2  

>U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidance
            abnormal protein1 protein.
          Length = 1732

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 88   YLVSASTVRLQLSLLHSNRLNKFFVMIFYTRTEFL 192
            Y V  STVR+   +   + LNKF V+I   +TE L
Sbjct: 1679 YPVIESTVRIGSMVAEKDNLNKFLVVIKSNQTENL 1713


>DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagellar
            transport protein protein.
          Length = 1737

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 88   YLVSASTVRLQLSLLHSNRLNKFFVMIFYTRTEFL 192
            Y V  STVR+   +   + LNKF V+I   +TE L
Sbjct: 1684 YPVIESTVRIGSMVAEKDNLNKFLVVIKSNQTENL 1718


>AF038608-4|AAU05594.2|  310|Caenorhabditis elegans Serpentine
           receptor, class z protein37 protein.
          Length = 310

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +1

Query: 61  FIFVIKGAFYLVSASTVRLQLSLLHSNRLNKFFVMIFYTRTEFLK 195
           F F+I    Y + A+ + +Q+S + SNR N   ++  ++   FL+
Sbjct: 251 FSFIISTLHYDIYATPLIIQVSYISSNRRNVRILLTSFSVRRFLR 295


>AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical
           protein Y48B6A.11 protein.
          Length = 922

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 294 PLSGRNSQFPSSVVFTTENTSANISS 217
           P +     FP  V+FTTE +SA+ SS
Sbjct: 19  PCASSGPLFPDDVLFTTEASSASSSS 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,854,009
Number of Sequences: 27780
Number of extensions: 157190
Number of successful extensions: 310
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)