Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00819
         (478 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   2.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   2.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   3.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   3.9  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   5.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.0  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 52  CASFIFVIKGAFYLVSASTVRLQLSLLHSNRLNKFFVMI 168
           C    F+    FYL S S  ++ LS+     L+ FF+++
Sbjct: 255 CMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLV 293


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 52  CASFIFVIKGAFYLVSASTVRLQLSLLHSNRLNKFFVMI 168
           C    F+    FYL S S  ++ LS+     L+ FF+++
Sbjct: 255 CMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLV 293


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 52  CASFIFVIKGAFYLVSASTVRLQLSLLHSNRLNKFFVMI 168
           C    F+    FYL S S  ++ LS+     L  FF+++
Sbjct: 251 CMGISFLTVLVFYLPSDSGEKVSLSISILLSLTVFFLLL 289


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 52  CASFIFVIKGAFYLVSASTVRLQLSLLHSNRLNKFFVMI 168
           C    F+    FYL S S  ++ LS+     L  FF+++
Sbjct: 247 CVGISFLSVLVFYLPSDSGEKVSLSISILLSLTVFFLLL 285


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 261 KREIGNFCPKGGK 299
           + EI  FCPK  K
Sbjct: 331 REEINTFCPKNNK 343


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 5/20 (25%), Positives = 13/20 (65%)
 Frame = +3

Query: 264 REIGNFCPKGGKLKVHMYRR 323
           +++   CP GG+ +++ + R
Sbjct: 606 KDLALICPDGGRAEINEWER 625


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 5/20 (25%), Positives = 13/20 (65%)
 Frame = +3

Query: 264 REIGNFCPKGGKLKVHMYRR 323
           +++   CP GG+ +++ + R
Sbjct: 606 KDLALICPDGGRAEINEWER 625


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 5/20 (25%), Positives = 13/20 (65%)
 Frame = +3

Query: 264 REIGNFCPKGGKLKVHMYRR 323
           +++   CP GG+ +++ + R
Sbjct: 606 KDLALICPDGGRAEINEWER 625


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,906
Number of Sequences: 438
Number of extensions: 2135
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)