Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00818
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    30   0.44 
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    29   1.0  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    25   9.5  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       25   9.5  

>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 721 STYETVKH-YSIVEFD*FIVSSIAFDNKDISDNYLSKLSSNKL 596
           STY+ +K+ + + +   F  S+  F N + SDN +S L S +L
Sbjct: 513 STYKVLKNDFQVFDLLNFFHSTFLFQNYEFSDNVISLLKSRRL 555


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
 Frame = -1

Query: 721 STYETVKHYSIVEFD*FIVSSIAFDNKDISDNYLSKLSSNKLAVHSFNLV-HVKHLFRLI 545
           S  +++++YS +     ++ S +  N   S+   S+  S + A+HS NL  H+K +  ++
Sbjct: 492 SNGKSIQYYSTLFVR--LIQSCSIQNLFDSEIVQSESKSTE-ALHSGNLTEHLKTVESIL 548

Query: 544 IITYHNETSLQNTIHSHTYNNTIKNEGTRST*RLRLLVNI 425
             + H E  + N I ++  + ++K   T S     +L  I
Sbjct: 549 SKSRHEEYRIANHIVAYLLSRSLKQNKTESDNSFAILTKI 588


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -3

Query: 260 DLRPRPVRATDASKAAETRTGPSFTNTSHGRPKLN 156
           DL+  P    +++      T P F NT++  P +N
Sbjct: 9   DLKNHPTSVQESTLNGSAVTDPQFGNTTNSLPSMN 43


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 236 RGPGEAASRQTRRRMTPSAHYSLYSRN 316
           R PG + SR+  RR +PSA ++    N
Sbjct: 205 RRPGRSRSRRRSRRPSPSAEHNSAEEN 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,081,255
Number of Sequences: 5004
Number of extensions: 58977
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)