Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00818
         (802 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0108 + 19808539-19808761,19809054-19809697,19809785-198098...    29   4.3  
03_01_0159 + 1298002-1298070,1298181-1298264,1300354-1300506,130...    28   9.9  
02_05_0656 + 30671152-30671227,30671330-30671464,30671591-306716...    28   9.9  

>02_04_0108 +
           19808539-19808761,19809054-19809697,19809785-19809844,
           19809879-19809938,19810079-19810372
          Length = 426

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/61 (27%), Positives = 33/61 (54%)
 Frame = -1

Query: 619 SKLSSNKLAVHSFNLVHVKHLFRLIIITYHNETSLQNTIHSHTYNNTIKNEGTRST*RLR 440
           S LSS    V ++++ +V HL  + +  Y+ ++ + N I S    NT++ +  +   RLR
Sbjct: 44  SILSSAWRNVATYSVRYVSHLRHITVQIYYTDSDINNLISSCPRLNTLRLKYFKGINRLR 103

Query: 439 L 437
           +
Sbjct: 104 I 104


>03_01_0159 +
           1298002-1298070,1298181-1298264,1300354-1300506,
           1300589-1300702,1300814-1300876
          Length = 160

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 381 SQNVALGRVRTTRSRWRHNF-KAFLEYNE*WADGVILRLVW 262
           S  +A GR+   R  WR N    F+   E  ADG +  ++W
Sbjct: 2   SGGIARGRLAEERKAWRKNHPHGFVAKPETLADGTVNLMIW 42


>02_05_0656 +
           30671152-30671227,30671330-30671464,30671591-30671676,
           30672184-30672278,30672431-30672556,30672659-30672809
          Length = 222

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +1

Query: 25  DWFVLYQLGKNIDPLIYKELMTEL 96
           +W +LY++GK+ D L+ KE + E+
Sbjct: 179 EWKILYKIGKDKDGLLRKEAVREV 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,220,281
Number of Sequences: 37544
Number of extensions: 366606
Number of successful extensions: 857
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)