Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00817
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...    83   2e-17
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...    79   2e-16
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    26   2.4  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    25   7.3  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   7.3  

>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 83.0 bits (196), Expect = 2e-17
 Identities = 37/66 (56%), Positives = 43/66 (65%)
 Frame = +3

Query: 57  AGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAP 236
           AGG  H R + DKYHPGYFGK+GMR FH  KN  + P +NLD+LWTLV  +TR KY    
Sbjct: 35  AGGLQHLRSHFDKYHPGYFGKVGMRRFHLMKNPLWRPTVNLDRLWTLVPNETREKYLGKN 94

Query: 237 DGKVPV 254
               PV
Sbjct: 95  TEVAPV 100


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score = 79.4 bits (187), Expect = 2e-16
 Identities = 35/66 (53%), Positives = 42/66 (63%)
 Frame = +3

Query: 57  AGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAP 236
           AGG  H R + DKYHPGYFGK+GMR FH  KN  + P +NLD+LWTL+  + R KY    
Sbjct: 35  AGGLQHLRSHFDKYHPGYFGKVGMRRFHLMKNPLWRPTVNLDRLWTLLPNEARDKYLGKN 94

Query: 237 DGKVPV 254
               PV
Sbjct: 95  TEVAPV 100


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 288 SNL*YPALTILRRGPCHLE 232
           SN+ YP L + + GP H+E
Sbjct: 302 SNVVYPGLDVFKDGPAHIE 320


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 174 NLDKLWTLVSEQTRLKYASAPDGKVP 251
           NL K W  +S     K++  P+G +P
Sbjct: 323 NLKKQWASISPNITYKHSYNPNGTIP 348


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1334

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 277  VSSFDNIETGTLPSGADAYFSLVCSETNVQSLSKFK 170
            V S DN+ET +L   AD     V  + NV+ ++ ++
Sbjct: 1175 VVSLDNLETQSLLDPADTSLEFVEKKENVKPIAIYR 1210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,599,343
Number of Sequences: 5004
Number of extensions: 30165
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)