Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00817
(455 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0027 + 16593133-16593573 86 1e-17
07_03_1250 - 25183375-25183815 85 3e-17
02_01_0563 + 4134954-4135388 84 6e-17
09_04_0302 + 16501020-16501049,16501568-16501659,16502063-165021... 27 5.4
02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486 27 5.4
06_03_0992 - 26680555-26680840,26680893-26681279,26681364-266824... 27 7.2
04_03_1020 - 21761297-21761555,21761630-21761739,21762402-217626... 27 7.2
12_01_0418 - 3304741-3304904,3305579-3305762,3307254-3307347,330... 27 9.5
03_05_0422 - 24076917-24077125,24077209-24077266,24077350-240773... 27 9.5
01_06_0884 + 32715963-32716284,32716837-32717567 27 9.5
>03_04_0027 + 16593133-16593573
Length = 146
Score = 85.8 bits (203), Expect = 1e-17
Identities = 38/67 (56%), Positives = 46/67 (68%)
Frame = +3
Query: 54 NAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASA 233
NAGG HHHRI DKYHPGYFGK+GMR FH N+ CP +N+++LW++V K A A
Sbjct: 34 NAGGMHHHRILFDKYHPGYFGKVGMRYFHKLSNRFHCPAVNVERLWSMVPTD---KAAEA 90
Query: 234 PDGKVPV 254
GK PV
Sbjct: 91 GAGKAPV 97
>07_03_1250 - 25183375-25183815
Length = 146
Score = 84.6 bits (200), Expect = 3e-17
Identities = 36/67 (53%), Positives = 48/67 (71%)
Frame = +3
Query: 54 NAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASA 233
NAGG HHHRI DKYHPGYFGK+GMR FH +NK + P +N+++LW++V + + A A
Sbjct: 34 NAGGMHHHRILFDKYHPGYFGKVGMRYFHRLRNKFYSPAVNVERLWSMVPAEQAAEAAGA 93
Query: 234 PDGKVPV 254
GK P+
Sbjct: 94 --GKAPL 98
>02_01_0563 + 4134954-4135388
Length = 144
Score = 83.8 bits (198), Expect = 6e-17
Identities = 37/67 (55%), Positives = 46/67 (68%)
Frame = +3
Query: 54 NAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASA 233
NAGG HHHRI DKYHPGYFGK+GMR FH N+ CP +N+++LW++V + A A
Sbjct: 34 NAGGMHHHRILFDKYHPGYFGKVGMRYFHRLSNRFHCPAVNVERLWSMVPAE-----AGA 88
Query: 234 PDGKVPV 254
GK PV
Sbjct: 89 GAGKAPV 95
>09_04_0302 +
16501020-16501049,16501568-16501659,16502063-16502198,
16502297-16502727,16502950-16503028
Length = 255
Score = 27.5 bits (58), Expect = 5.4
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 81 FCDGAHHQHYHDLLDAYG 28
+C+G HH H H D+ G
Sbjct: 132 YCNGGHHHHGHQCYDSVG 149
>02_02_0525 -
11182043-11182080,11182386-11182511,11182760-11183486
Length = 296
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 64 PPALPRPPGCLRCFPIRPCP 5
PPA P PP L C P+ P P
Sbjct: 10 PPAPPSPPPALPCDPMPPPP 29
>06_03_0992 -
26680555-26680840,26680893-26681279,26681364-26682441,
26682537-26683083
Length = 765
Score = 27.1 bits (57), Expect = 7.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 223 MHLLQMARSPSQYCQSWILQVARQRQTP 306
+H L + +P YC+SW+ +V R+ P
Sbjct: 532 LHCLAHSLNPKYYCESWLAEVP-TREAP 558
>04_03_1020 -
21761297-21761555,21761630-21761739,21762402-21762635,
21762710-21762817,21762910-21762969,21763549-21763624,
21763710-21763870,21764485-21764547,21764657-21764744,
21765062-21765592,21766344-21766783
Length = 709
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = -2
Query: 67 SPP-ALPRPPGCLRCFPIRPCP 5
SPP LP PPG C P+ P P
Sbjct: 263 SPPHPLPLPPGPATCSPLPPSP 284
>12_01_0418 -
3304741-3304904,3305579-3305762,3307254-3307347,
3308530-3308882,3309140-3309274,3309354-3309392,
3309587-3309652,3309739-3309834,3310291-3310527,
3310602-3310722,3310854-3310889,3313062-3313159,
3313298-3313591,3313842-3313904,3314280-3314438,
3314557-3314655
Length = 745
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -3
Query: 222 TSASSVQRLMSKAYLSSKLDRNSCSF*SGNFSYQVCQSIQDGTCP 88
T+ SSV ++A+ KL + SF +GN S+ ++ +G+ P
Sbjct: 325 TTDSSVNGWKAEAHEPLKLFQKGSSFLAGNLSFSRARASLEGSAP 369
>03_05_0422 -
24076917-24077125,24077209-24077266,24077350-24077399,
24077494-24077754,24077837-24078230,24081256-24081366,
24082255-24082596
Length = 474
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 60 GGEHHHRINMDKYH 101
GG HHH+ NM K H
Sbjct: 313 GGGHHHKQNMQKQH 326
>01_06_0884 + 32715963-32716284,32716837-32717567
Length = 350
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 73 WCSPPALPRPPGCLRCFP 20
WC PA+P+ RCFP
Sbjct: 186 WCPVPAMPQVDWEFRCFP 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,928,096
Number of Sequences: 37544
Number of extensions: 214011
Number of successful extensions: 709
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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