Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00817
(455 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-7|AAK27870.1| 145|Caenorhabditis elegans Hypothetical ... 101 3e-22
AC087079-8|AAK27871.1| 88|Caenorhabditis elegans Hypothetical ... 48 3e-06
Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical pr... 28 2.8
Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical pr... 28 2.8
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 28 2.8
AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical... 28 2.8
AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical... 28 2.8
U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily as... 27 6.5
U41995-1|AAA83459.1| 301|Caenorhabditis elegans Serpentine rece... 27 6.5
AF016433-6|AAB65391.1| 335|Caenorhabditis elegans Seven tm rece... 27 8.6
>AC087079-7|AAK27870.1| 145|Caenorhabditis elegans Hypothetical
protein Y37E3.8a protein.
Length = 145
Score = 101 bits (241), Expect = 3e-22
Identities = 43/73 (58%), Positives = 56/73 (76%)
Frame = +3
Query: 54 NAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASA 233
NAGG+HHHRIN DKYHPGYFGK+GMR FH KN+++CP +N+++LW+LV ++ R K A
Sbjct: 34 NAGGQHHHRINRDKYHPGYFGKVGMRVFHLNKNQHYCPTVNVERLWSLVPQEVRDK---A 90
Query: 234 PDGKVPVSILSKL 272
GK PV +KL
Sbjct: 91 TGGKSPVIDCTKL 103
>AC087079-8|AAK27871.1| 88|Caenorhabditis elegans Hypothetical
protein Y37E3.8b protein.
Length = 88
Score = 48.0 bits (109), Expect = 3e-06
Identities = 22/49 (44%), Positives = 33/49 (67%)
Frame = +3
Query: 126 MRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVSILSKL 272
MR FH KN+++CP +N+++LW+LV ++ R K A GK PV +KL
Sbjct: 1 MRVFHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKL 46
>Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical
protein Y37A1B.17b protein.
Length = 1467
Score = 28.3 bits (60), Expect = 2.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 268 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 372
SW+ +++ Q P+T C ++K+ REE C
Sbjct: 5 SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38
>Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical
protein Y37A1B.17a protein.
Length = 1538
Score = 28.3 bits (60), Expect = 2.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 268 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 372
SW+ +++ Q P+T C ++K+ REE C
Sbjct: 5 SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 28.3 bits (60), Expect = 2.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 61 PALPRPPGCLRCFPIRPCP 5
PA P+ P C C P +PCP
Sbjct: 50 PACPQAPSCPVCPPPQPCP 68
>AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical
protein Y37A1B.17b protein.
Length = 1467
Score = 28.3 bits (60), Expect = 2.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 268 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 372
SW+ +++ Q P+T C ++K+ REE C
Sbjct: 5 SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38
>AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical
protein Y37A1B.17a protein.
Length = 1538
Score = 28.3 bits (60), Expect = 2.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 268 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 372
SW+ +++ Q P+T C ++K+ REE C
Sbjct: 5 SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38
>U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily
assigned gene nameprotein 224 protein.
Length = 465
Score = 27.1 bits (57), Expect = 6.5
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Frame = +3
Query: 60 GGEHHHRINMDKYHPGYF-----GKLGMRN-FHFRKNKNFCPVLNLDKLW 191
G E HH D YHP F +L + N + F KNK +C D+L+
Sbjct: 285 GVECHHHSTTDTYHPNCFRCETCRQLLVDNIYFFYKNKYYCGRHYADQLY 334
>U41995-1|AAA83459.1| 301|Caenorhabditis elegans Serpentine
receptor, class x protein47 protein.
Length = 301
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 176 VQNWTEILVLSKVEISHTKFAKVSR 102
+ NWT L LSKV H F ++R
Sbjct: 20 IANWTVFLFLSKVPSIHKSFGSLTR 44
>AF016433-6|AAB65391.1| 335|Caenorhabditis elegans Seven tm
receptor protein 131 protein.
Length = 335
Score = 26.6 bits (56), Expect = 8.6
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = -3
Query: 393 DSTQAPPTSLIFFSADFEKNFAFTMTGCLGSLPLPSNL*YPALTILRRGPCHLEQMHTSA 214
DS S +F+S D + M C+GSL L + + LTI+ G ++M+ S
Sbjct: 173 DSNTMSFVSGLFWSLDENGTKHWNMKDCIGSLGLAALMIVCCLTIVFCGVKTYKKMNDSG 232
Query: 213 SSV 205
+S+
Sbjct: 233 NSL 235
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,089,636
Number of Sequences: 27780
Number of extensions: 178199
Number of successful extensions: 495
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -