Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00813
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    27   2.6  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    26   4.5  
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    26   6.0  

>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 210 PVAPEPPRKPFKLFRLTYLK--MKMRSDHQSLHCQFRIQDMFLRLC 341
           P A  PP  P K   L+Y K   K +SD + L+ + R+ ++FLR C
Sbjct: 71  PAAIVPPI-PGKQSLLSYAKHPRKAKSDAEFLNFRSRMLELFLRQC 115


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
 Frame = +2

Query: 248 IPTYLLEDEDEKRPSIASL----PVSNTGYVSAFVPVQSAAGCALTACSAPHWCAAMPSY 415
           I  +LL+DE+     I ++    PV     +++  P +S +  ALTA   PH    +   
Sbjct: 202 IGAFLLKDENTDTDVITNIDQVYPVGVFAQITSIFPAKSGSEPALTAVLYPHRRIRITEL 261

Query: 416 SAPLR*EDAEGLSS 457
             P   EDA+  +S
Sbjct: 262 IPPK--EDADSAAS 273


>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 395 TNEEQNTRSRRNPLHFVLAQTQKHILYSKLAMKRLMVASHL 273
           T EE +T    +PL  V+       L   ++ KR+MV SH+
Sbjct: 177 TKEEDSTDPEEDPLLHVINHGASIHLAKFVSKKRVMVLSHM 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,498,708
Number of Sequences: 5004
Number of extensions: 48755
Number of successful extensions: 146
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)