Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00813
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0085 - 5539188-5539388,5539576-5539714,5540108-5540279,554...    29   3.6  
12_02_0493 - 19677481-19677776,19678953-19679017,19679455-196795...    28   6.2  
09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638...    28   6.2  
04_04_0418 + 25077748-25078101,25079413-25079538,25080683-250815...    28   6.2  
09_06_0209 - 21594374-21594494,21594579-21595522                       28   8.3  

>03_02_0085 -
           5539188-5539388,5539576-5539714,5540108-5540279,
           5541119-5541165,5541450-5541527,5542113-5542177,
           5543108-5543155,5543393-5543473,5543586-5543783
          Length = 342

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 138 LVQPSTEPIDLSVRRCSPLTLAHPPVAPEPPRKP 239
           L+ P   P +  +R    L+L+ PP  P PP  P
Sbjct: 28  LIAPDAAPDEARLRPLLSLSLSPPPTPPSPPPPP 61


>12_02_0493 -
           19677481-19677776,19678953-19679017,19679455-19679594,
           19680723-19680801,19683476-19683675
          Length = 259

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 304 ASFEYRICFCVCAS-TKCSGLRLDRVFCSSLVCSYAL 411
           ASFE RIC C CA+     G  +  +  + ++C   L
Sbjct: 101 ASFETRICLCGCANQPDLEGPEVPNIITTGVLCQIIL 137


>09_04_0365 -
           16962608-16963174,16963301-16963486,16963824-16963896,
           16964307-16964497,16964982-16965198,16965394-16965797,
           16966593-16966658,16966668-16966721,16966945-16967079,
           16967194-16967391,16967734-16967918,16968990-16969527
          Length = 937

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +3

Query: 177 RRCSPLTLAHPPVAPEPPRKPFK 245
           RR  P T   PP  P PPR P K
Sbjct: 19  RRSKPATAPPPPPPPTPPRPPQK 41


>04_04_0418 +
           25077748-25078101,25079413-25079538,25080683-25081593,
           25081970-25082453
          Length = 624

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 316 YRICFCVCASTKCSGLRLDRVFCSSLVCSYALLLGSFEMRGRRRAEL 456
           +R+ F VCA   C G  +  VF + +   Y +L  S   R  R  +L
Sbjct: 577 FRLTFYVCAIVCCCGTLVSVVFIARIKPVYQMLYASGSFRHPRSQQL 623


>09_06_0209 - 21594374-21594494,21594579-21595522
          Length = 354

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
 Frame = +2

Query: 329 SAFVPVQSAAGCA--LTACSAPHWCAAMPSYSAPLR*EDAEGLSSVFTVI*SPTPAWRHL 502
           S  V V  A G +  L A  A      +P Y   L   D  G   + ++I SP PA  H 
Sbjct: 262 SGRVQVAGAGGASTLLDAEVAAGSLLVVPRYGVSLAAADDAGGMELVSLIKSPRPATEHF 321

Query: 503 GRAKSLCLNIHAAIVHYAVN 562
               S+   + A IV  A+N
Sbjct: 322 TGKGSVIGGLTAEIVQAALN 341


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,442,327
Number of Sequences: 37544
Number of extensions: 336960
Number of successful extensions: 1127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)