Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00813
         (702 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    25   3.0  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    25   3.0  
AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase ...    25   3.0  
EF427621-5|ABO09853.1|   62|Anopheles gambiae tal-like protein A...    23   9.3  
AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ chann...    23   9.3  
AJ010903-1|CAA09389.1|  373|Anopheles gambiae ICHIT protein prot...    23   9.3  

>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = -1

Query: 144 VPMLEQVEV*AMKLTLAS*EVEVV*VILHFRGNQQHMEEVMAPAVE 7
           VP+L +  + AM L   S  V VV + +HFR  Q H    MAP V+
Sbjct: 303 VPLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHR---MAPWVK 345


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = -1

Query: 144 VPMLEQVEV*AMKLTLAS*EVEVV*VILHFRGNQQHMEEVMAPAVE 7
           VP+L +  + AM L   S  V VV + +HFR  Q H    MAP V+
Sbjct: 303 VPLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHR---MAPWVK 345


>AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase
           protein.
          Length = 849

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 372 VKAQPAALCTGTNAETYPVFETGNEAID 289
           +KA+   +CTG +   YP   +G+E  D
Sbjct: 232 LKARIKKVCTGYHVSLYPCPSSGSERTD 259


>EF427621-5|ABO09853.1|   62|Anopheles gambiae tal-like protein AA
           protein.
          Length = 62

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 443 RRPLISKEPSKRA*LHTNEEQNTRSRRNPLHFVLAQTQKH 324
           RRP      S+R+  H + +Q    +R P H    Q Q+H
Sbjct: 12  RRPGSGASSSQRSPFHHHHQQQQNHQRMPHHH--QQQQQH 49


>AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ channel
           protein.
          Length = 574

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 326 VSAFVPVQSAAGCALTACSA 385
           +S  +P +  AGCA   CSA
Sbjct: 163 LSVRLPPEDGAGCATQPCSA 182


>AJ010903-1|CAA09389.1|  373|Anopheles gambiae ICHIT protein
           protein.
          Length = 373

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 195 TLAHPPVAPEPPRKP 239
           T A+PP   EPP  P
Sbjct: 268 TTAYPPTTSEPPSTP 282


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 650,708
Number of Sequences: 2352
Number of extensions: 12903
Number of successful extensions: 31
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71504505
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)