Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00813
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical pr...    29   4.3  
X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomera...    29   4.3  
U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical p...    29   4.3  
U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    28   5.6  
AF067214-6|AAC17005.2|  457|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical
           protein M01E5.5b protein.
          Length = 734

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 480 RRPLGAIWGVLNHCALTYTPP*CIMPS 560
           ++P G  W  L HC   + PP   +PS
Sbjct: 180 KKPAGVKWNSLQHCGPLFAPPYIPLPS 206


>Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical
           protein M01E5.5a protein.
          Length = 806

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 480 RRPLGAIWGVLNHCALTYTPP*CIMPS 560
           ++P G  W  L HC   + PP   +PS
Sbjct: 252 KKPAGVKWNSLQHCGPLFAPPYIPLPS 278


>X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomerase
           protein.
          Length = 806

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 480 RRPLGAIWGVLNHCALTYTPP*CIMPS 560
           ++P G  W  L HC   + PP   +PS
Sbjct: 252 KKPAGVKWNSLQHCGPLFAPPYIPLPS 278


>U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical
           protein C37C3.1 protein.
          Length = 470

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -3

Query: 433 SSQRSRVRGHSCTPMRSRTRGQGATRCTLYW 341
           S  RSR    + T  RSRTR Q  +  TL W
Sbjct: 365 SRSRSRTPNRNWTRARSRTRSQAKSSSTLTW 395


>U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical
           protein F40F4.6 protein.
          Length = 2214

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +2

Query: 260 LLEDEDEKRPSIASLPVSNTGYVSAFVPVQSAAGCALTACSAPHWCAAMPSYSAPLR*ED 439
           ++E   E   SI  L  S  GY+S F+ V    G  L       W AAM   +  +    
Sbjct: 434 VIEQATESVQSIVDLLASEPGYLSKFIVVLFDNGKLLVNRQYDSWDAAMVDLTKAIHSAP 493

Query: 440 AEG 448
           +EG
Sbjct: 494 SEG 496


>U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical protein
            M03A8.2 protein.
          Length = 2275

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 195  TLAHPPVAPEPPRKPFKLFRLTYLKMKMRSDHQS 296
            +L   P+ P P + P  L  LTYL+ K+ S+HQS
Sbjct: 1692 SLTLEPLRPSPVQPPTPLGDLTYLE-KISSNHQS 1724


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
 Frame = +3

Query: 138 LVQPSTEPIDLSVRRCSPLTL------AHPPVAPEPPRKPFKL----FRLTYLKMKMRSD 287
           L+QPS     L  +   PL L      AHP + P P R+  +L     +L  L++ ++  
Sbjct: 496 LLQPSLPQNQLRSQPAHPLILPRLSQQAHPLIPPRPSRRALRLILPQLKLLLLRLTLQRQ 555

Query: 288 HQSLH 302
            Q LH
Sbjct: 556 CQELH 560


>AF067214-6|AAC17005.2|  457|Caenorhabditis elegans Hypothetical
           protein F56C3.2 protein.
          Length = 457

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 106 FHCLHLYLFKHWYSRQQN 159
           +H ++   F HWYSR QN
Sbjct: 39  YHLINFQEFNHWYSRFQN 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,078,410
Number of Sequences: 27780
Number of extensions: 285955
Number of successful extensions: 841
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)