Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00812
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   139   3e-34
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   139   4e-34
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    26   5.9  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  139 bits (337), Expect = 3e-34
 Identities = 64/90 (71%), Positives = 77/90 (85%)
 Frame = +2

Query: 254 GHSCYRQRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRAS 433
           GH CYR RRDGERKRKSVRGCIV  +L+VLAL IV++G Q+IPGLTD  VP+RLGPKRAS
Sbjct: 80  GHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPKRLGPKRAS 139

Query: 434 KIRKLFNLSKEDDVRRYVVKRVLPARKEKK 523
           KIR+ FNLSKEDDVR++V++R +  +KE K
Sbjct: 140 KIRRFFNLSKEDDVRQFVIRREVVPKKEGK 169



 Score =  109 bits (263), Expect = 3e-25
 Identities = 51/82 (62%), Positives = 62/82 (75%)
 Frame = +3

Query: 18  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 197
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 198 FPMKQGVLTNSRVRLLMSKATH 263
           FPM QGVL   RVRLL+ +A H
Sbjct: 61  FPMFQGVLLPHRVRLLL-RAGH 81



 Score = 45.6 bits (103), Expect = 7e-06
 Identities = 28/68 (41%), Positives = 35/68 (51%)
 Frame = +1

Query: 487 RQTRAPSQEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLL 666
           R+   P +EGK   KP  KAPKIQRLVTP  LQ                    AE+A+L+
Sbjct: 159 RREVVPKKEGK---KPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLM 215

Query: 667 AQRKMESK 690
           A+R  E+K
Sbjct: 216 AKRVAEAK 223


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  139 bits (336), Expect = 4e-34
 Identities = 63/90 (70%), Positives = 77/90 (85%)
 Frame = +2

Query: 254 GHSCYRQRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRAS 433
           GH CYR RRDGERKRKSVRGCIV  +L+VLAL I+++G Q+IPGLTD  VP+RLGPKRAS
Sbjct: 80  GHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLTDVTVPKRLGPKRAS 139

Query: 434 KIRKLFNLSKEDDVRRYVVKRVLPARKEKK 523
           KIR+ FNLSKEDDVR++V++R +  +KE K
Sbjct: 140 KIRRFFNLSKEDDVRQFVIRREVVPKKEGK 169



 Score =  109 bits (263), Expect = 3e-25
 Identities = 51/82 (62%), Positives = 62/82 (75%)
 Frame = +3

Query: 18  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 197
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 198 FPMKQGVLTNSRVRLLMSKATH 263
           FPM QGVL   RVRLL+ +A H
Sbjct: 61  FPMFQGVLLPHRVRLLL-RAGH 81



 Score = 45.6 bits (103), Expect = 7e-06
 Identities = 28/68 (41%), Positives = 35/68 (51%)
 Frame = +1

Query: 487 RQTRAPSQEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLL 666
           R+   P +EGK   KP  KAPKIQRLVTP  LQ                    AE+A+L+
Sbjct: 159 RREVVPKKEGK---KPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLM 215

Query: 667 AQRKMESK 690
           A+R  E+K
Sbjct: 216 AKRVAEAK 223


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
 Frame = +3

Query: 30  VSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRV--AGGNDKQGFP 203
           + Y A    K+   VD H    F EK +   +EA +L  +      RV     ++ + F 
Sbjct: 317 IPYSALPFSKI--AVDFHIDENFIEKNLLEIIEAKKLNGKVDSLQKRVYIEPSSEPENF- 373

Query: 204 MKQGVLTNSRVRLLMSKATHVTDSAAMERENVNQFVDVL 320
             + +   ++  LL SKA ++   AAM  EN +    V+
Sbjct: 374 --EDIKNIAQTSLLYSKALYLQTLAAMNTENTDDEAPVI 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,747,362
Number of Sequences: 5004
Number of extensions: 54283
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)