Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00812
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...   118   4e-27
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...   116   1e-26
06_03_0734 - 23980576-23980671,23980799-23981338,23981493-239817...    28   6.1  
11_01_0125 + 1018059-1018403                                           28   8.0  
02_05_0956 - 33064104-33066425                                         28   8.0  

>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score =  118 bits (284), Expect = 4e-27
 Identities = 62/105 (59%), Positives = 76/105 (72%), Gaps = 5/105 (4%)
 Frame = +2

Query: 251 KGHSCYRQ--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPK 424
           +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG  ++PGLTD   PR  GPK
Sbjct: 79  RGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGENDLPGLTDTEKPRMRGPK 138

Query: 425 RASKIRKLFNLSKEDDVRRYV--VKRVLPARKEKKMLN-PDIRHL 550
           RASKIRKLFNLSK+DDVR+YV   +R    +  KK+   P I+ L
Sbjct: 139 RASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRL 183



 Score =  110 bits (264), Expect = 1e-24
 Identities = 48/81 (59%), Positives = 61/81 (75%)
 Frame = +3

Query: 18  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 197
           MK N++ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 198 FPMKQGVLTNSRVRLLMSKAT 260
           FPMKQGVLT  RVRLL+ + T
Sbjct: 61  FPMKQGVLTAGRVRLLLHRGT 81



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 26/57 (45%), Positives = 29/57 (50%)
 Frame = +1

Query: 520 ENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKMESK 690
           +N K   KAPKIQRLVTP+ LQ                 S  AEY KLLAQR  E +
Sbjct: 169 KNGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKKKSEAAEYQKLLAQRLKEQR 225


>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score =  116 bits (280), Expect = 1e-26
 Identities = 61/105 (58%), Positives = 76/105 (72%), Gaps = 5/105 (4%)
 Frame = +2

Query: 251 KGHSCYRQ--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPK 424
           +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG  ++PGLTD   PR  GPK
Sbjct: 79  RGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGDNDLPGLTDTEKPRMRGPK 138

Query: 425 RASKIRKLFNLSKEDDVRRYV--VKRVLPARKEKKMLN-PDIRHL 550
           RASKIRKLFNL+K+DDVR+YV   +R    +  KK+   P I+ L
Sbjct: 139 RASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRL 183



 Score =  113 bits (271), Expect = 2e-25
 Identities = 49/81 (60%), Positives = 62/81 (76%)
 Frame = +3

Query: 18  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 197
           MK N++ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 198 FPMKQGVLTNSRVRLLMSKAT 260
           FPMKQGVLT+ RVRLL+ + T
Sbjct: 61  FPMKQGVLTSGRVRLLLHRGT 81



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 26/57 (45%), Positives = 29/57 (50%)
 Frame = +1

Query: 520 ENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKMESK 690
           +N K   KAPKIQRLVTP+ LQ                 S  AEY KLLAQR  E +
Sbjct: 169 KNGKKVSKAPKIQRLVTPLTLQRKRARIAQKKQRIAKKKSEAAEYQKLLAQRLKEQR 225


>06_03_0734 -
           23980576-23980671,23980799-23981338,23981493-23981714,
           23981791-23982144,23982460-23982546
          Length = 432

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 224 KQPCSSSDVKGHSCYRQRRDGERKRK 301
           K PCSS+   G  C+ +R   + KR+
Sbjct: 14  KSPCSSAGGGGRGCHNERGSADHKRR 39


>11_01_0125 + 1018059-1018403
          Length = 114

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +2

Query: 149 MEGLCTSCRWRQRQARIPDETGRPDKQPCSSSDVKGHSCYRQRRDGERKRKSVRGC 316
           +EG+    RWR+  AR      RP  +  S     G    +    G  K +++RGC
Sbjct: 57  VEGVGGRDRWRRGAARRGRRRQRPRDEKASGGRGGGADLGKDSGRGRTKNEALRGC 112


>02_05_0956 - 33064104-33066425
          Length = 773

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 508 GWEHAFDDITTYIIFFAKV 452
           G EHA DD++TYII  A V
Sbjct: 24  GVEHATDDVSTYIIHVAHV 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,024,504
Number of Sequences: 37544
Number of extensions: 406515
Number of successful extensions: 1210
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)