Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00811
(799 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.3
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 28 1.8
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 27 3.1
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 4.1
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 4.1
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 26 5.4
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 25 9.5
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb... 25 9.5
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.3 bits (60), Expect = 1.3
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = +3
Query: 276 SSVRATIRESKYPTGSPSCLWT--TATLPVTSGTTASKLLPSARGQSLSGALQTSPGSST 449
+S T S PTG S L T T T+P TS ++ S +P S P +ST
Sbjct: 168 TSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST 227
Query: 450 R-PKDSSLPTDILTILTT 500
+S+PT + L+T
Sbjct: 228 SCTTSTSIPTGGSSSLST 245
Score = 26.2 bits (55), Expect = 5.4
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Frame = +3
Query: 312 PTGSPSCLWTTATLPV-----TSGTTASKLLPSARGQSLSGALQTSPGSSTRPKDSSLPT 476
PT P+ +T+T P ++GT++S LL ++ + S ++ + S+T + PT
Sbjct: 357 PTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPT 416
Query: 477 DILTILTT 500
T LTT
Sbjct: 417 SSSTPLTT 424
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.9 bits (59), Expect = 1.8
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +3
Query: 261 TNSLRSSVRATIRESKYPTGSPSCLWTTATLPVT-SGTTASKLLPSARGQSLSGALQTSP 437
T+S SS +T +S T + S L T + P+T S + S LP+ SLS ++
Sbjct: 286 TSSSGSSQDSTTIDSTPSTIATSTLQPTTSSPITTSAPSLSSALPTTYPSSLSTEVEVEY 345
Query: 438 GSSTRPKDSSLPT 476
+ T SS+ T
Sbjct: 346 FTKTITDTSSIVT 358
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 27.1 bits (57), Expect = 3.1
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = -2
Query: 234 LSCQG*SLFLLPSNRRGVAALYQSGSSQGGTYRSRVLGSTDTTGPHL----CRSLAQRRL 67
LS SL ++P N GV+ LY G Y V+ D T L R L R +
Sbjct: 661 LSSPANSLCIIPMNVNGVSTLYLHIGLMNGVYLRTVI---DVTSGQLLDTRTRFLGPRAV 717
Query: 66 PILPLTV 46
I P+T+
Sbjct: 718 KIYPITM 724
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +3
Query: 18 TSSSPSQVKTXXXXXXXXXXXXDYDTNEDLLYPYSPTPYFG 140
T++SP ++ +YD+ +YPY P P+ G
Sbjct: 448 TANSPIAYQSYSVMPTYWSFPQNYDSTVPAVYPYMPPPFSG 488
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.6 bits (56), Expect = 4.1
Identities = 24/78 (30%), Positives = 39/78 (50%)
Frame = +3
Query: 243 PQSYM*TNSLRSSVRATIRESKYPTGSPSCLWTTATLPVTSGTTASKLLPSARGQSLSGA 422
PQS + + SS A+ +S T S ++TL SG++A +PS + S +
Sbjct: 478 PQS---STPISSSSSASSPQSTLSTSSEVVSEVSSTL--LSGSSA---IPSTSSSTPSSS 529
Query: 423 LQTSPGSSTRPKDSSLPT 476
+ +SP +S SS+PT
Sbjct: 530 IISSPMTSVLSSSSSIPT 547
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 285 RATIRESKYPTGSPSCLWTTATLPVTSGTTAS 380
R + E+KYPT SP+ + + P GTTA+
Sbjct: 246 RRLLLEAKYPTVSPTNEPSAHSRPSPQGTTAN 277
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +2
Query: 371 DSVKTVTISTGPITKRCAADVARIVNASEGLVVAYGYSDNSDDIQN 508
DS + T G I +V RI+N +AYG SD +N
Sbjct: 154 DSQRAATKDAGAIA---GLNVLRIINEPTAAAIAYGLDAKSDKPKN 196
>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 339
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 370 VPDVTGSVAVVHRHDGDPVGYLLSLIVA 287
+PD+TG VA+V G +GY+ +L +A
Sbjct: 37 IPDLTGKVALVTGSSGG-IGYVTALELA 63
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,141,972
Number of Sequences: 5004
Number of extensions: 65899
Number of successful extensions: 199
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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