Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00811
(799 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008... 30 2.5
06_03_0105 + 16693771-16693780,16693833-16693876,16694274-166943... 30 2.5
03_02_0152 - 5951201-5951616,5952228-5952602,5955534-5955948 29 4.3
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680... 29 5.7
03_05_1071 + 30133696-30133874,30134294-30135200,30135224-301353... 29 5.7
02_05_1113 + 34207997-34208380 29 5.7
12_01_0015 - 111666-111747,112043-112368,112500-112635,112772-11... 28 7.5
11_01_0015 - 115965-116076,116432-116757,116889-117024,117161-11... 28 7.5
01_06_1193 - 35306608-35306777,35306869-35306890,35306988-353069... 28 9.9
01_05_0807 + 25409598-25410074 28 9.9
>07_03_1486 + 26899479-26899549,26899861-26899989,26900649-26900834,
26901025-26901247,26901662-26901666,26901796-26901924,
26902697-26902894,26903138-26903356,26903461-26903699,
26903797-26903888,26904009-26904224,26904327-26904554,
26904631-26904722,26904806-26904899,26905475-26905567,
26905667-26906640,26906727-26906841,26907135-26908895
Length = 1687
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +3
Query: 309 YPTGSPSCLWTTATLPVTSGTTASKLLPS-ARGQSLSGALQTSPGSSTRPKDSSLPTDI 482
+P G P WT A + S +K P A G SL + + RP SS+ D+
Sbjct: 940 FPRGQPDVPWTQANIQQDSALEETKFSPPLADGVSLDYSNMHGEENEFRPDGSSIDADM 998
>06_03_0105 +
16693771-16693780,16693833-16693876,16694274-16694348,
16694548-16694784,16694880-16695050,16695137-16695250
Length = 216
Score = 29.9 bits (64), Expect = 2.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 359 NWKCRCRPQTRRGSCWVF 306
N+ CRCRP+ RR W +
Sbjct: 5 NYVCRCRPENRRNKGWAY 22
>03_02_0152 - 5951201-5951616,5952228-5952602,5955534-5955948
Length = 401
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +3
Query: 276 SSVRATIRESKYPTGSPSCLWTTATLPVTSGTTASKL--LPSARGQSLSGALQTSPGSST 449
SSV A + P+ PS L+ T++LP + A+K + + SG + P ++
Sbjct: 59 SSVAAILAAPTEPSAPPSGLFRTSSLPTVAAAEAAKKQGVDELNCRRPSGGAEAEPAAAR 118
Query: 450 RPKDSS 467
P S
Sbjct: 119 LPASGS 124
>12_01_0752 -
6798938-6799312,6799628-6799768,6800257-6800325,
6800407-6800454,6801740-6801836,6801922-6802001,
6802099-6802170,6802335-6802429,6802853-6802934,
6805476-6805853
Length = 478
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +1
Query: 304 ANTQQDPRRVCGRQRHFQLHQGRQRQNCYHQHGANH 411
+N ++ PRR GR R GR R YHQH NH
Sbjct: 359 SNDKEGPRRGRGRGRG-----GRGRGRGYHQHNNNH 389
>03_05_1071 +
30133696-30133874,30134294-30135200,30135224-30135358,
30135545-30136553,30136699-30136703
Length = 744
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 354 PVTSGTTASKLLPSARGQSLSGALQTSPGSS 446
P +GT+A LLPS G + S ++Q + GS+
Sbjct: 303 PPAAGTSAGPLLPSGGGATGSASVQATGGSA 333
>02_05_1113 + 34207997-34208380
Length = 127
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = +2
Query: 542 WSRVRTARRLEDPDGIQHEEGLCRR 616
W R RTARR DG EEG C R
Sbjct: 45 WRRSRTARRTPVADGDGSEEGGCGR 69
>12_01_0015 -
111666-111747,112043-112368,112500-112635,112772-112955,
113067-113135,113703-113829,115810-116051,116125-116279,
116751-116822,116908-116976,117058-117129,117217-117349,
117439-117944,118033-118567,118753-118819
Length = 924
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -1
Query: 400 RADGNSFDAVVPDVTG--SVAVVHRHDGDPVGYLLSLIVALTDERKLF 263
+ DGNSF +PD TG + +H D G L + L + ++ F
Sbjct: 439 KLDGNSFTGQIPDFTGCHDLQYIHLEDNQLTGALPPSLGELPNLKEFF 486
>11_01_0015 -
115965-116076,116432-116757,116889-117024,117161-117344,
117455-117523,118091-118217,120028-120269,120343-120497,
120969-121040,121126-121194,121276-121347,121435-121567,
121661-122166,122255-122789,122943-123018
Length = 937
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -1
Query: 400 RADGNSFDAVVPDVTG--SVAVVHRHDGDPVGYLLSLIVALTDERKLF 263
+ DGNSF +PD TG + +H D G L + L + ++ F
Sbjct: 442 KLDGNSFTGQIPDFTGCHDLQYIHLEDNQLTGALPPSLGELPNLKEFF 489
>01_06_1193 -
35306608-35306777,35306869-35306890,35306988-35306996,
35307107-35307115,35307470-35307491,35307981-35308784,
35308861-35309088,35309250-35309335,35309449-35309530,
35309630-35309778,35309992-35310105,35310961-35311059,
35311243-35311321,35311873-35312021
Length = 673
Score = 27.9 bits (59), Expect = 9.9
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +3
Query: 279 SVRATIRESKYPTGSPSCLWT--TATLPVTSGTTASKLLPSARGQSLSGALQTSPGSSTR 452
SV +T SPS + +A+LP+ +G+T S L + + Q ++G Q S+
Sbjct: 493 SVSSTYSAPSASYTSPSMAYVPPSASLPIWNGSTTSNGLSATQAQ-MNGNQQPPGSSAAA 551
Query: 453 PKDSSLPTDILTILTTFK 506
K +P ++ + L K
Sbjct: 552 SKPYYIPDNLFSDLIDLK 569
>01_05_0807 + 25409598-25410074
Length = 158
Score = 27.9 bits (59), Expect = 9.9
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Frame = +2
Query: 515 VSW*KGLILWSRVRTARRLEDPDGIQHEEGLCRRKFNQQSL----VQLGYGRRLHQRGE 679
VS +G WS V + G H EG RR+ ++ + LG GRR +RGE
Sbjct: 9 VSRDRGCESWSIVAEGESRKGEQGALHGEGEDRRRSRREEVRVCGFALGQGRRNARRGE 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,628,198
Number of Sequences: 37544
Number of extensions: 481725
Number of successful extensions: 1395
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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