Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00809
(715 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1060 - 30023407-30023553,30024274-30024390,30024958-300251... 36 0.042
06_03_0105 + 16693771-16693780,16693833-16693876,16694274-166943... 30 2.1
03_01_0170 + 1389759-1391159 29 3.7
09_04_0523 + 18310695-18311837,18312050-18312109,18312232-183123... 29 4.8
05_06_0104 - 25603568-25603867,25603965-25604162,25604247-256045... 28 6.4
04_01_0408 - 5393354-5393659,5393974-5394219,5394442-5394583,539... 28 6.4
03_02_0674 - 10329933-10331537 28 6.4
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 28 6.4
>03_05_1060 -
30023407-30023553,30024274-30024390,30024958-30025129,
30026116-30026198,30026299-30026917,30027157-30027280,
30027637-30027745,30028214-30028399,30028716-30028763,
30028808-30028979,30029034-30029209
Length = 650
Score = 35.5 bits (78), Expect = 0.042
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 1/135 (0%)
Frame = +3
Query: 75 ASEPDYHTNEDLLYPYSPIP-YFGMYHLVKIPIGRGLVHHVDYWGEGKVTNLDRVRGFRR 251
AS P Y ++ + PY I +FG+ + G G + V EG++T L R G R
Sbjct: 248 ASSPIYEVSQ-INRPYGQIKRWFGIRLYYALRDGTGSSNVVASMSEGRLTTLLRSIGIGR 306
Query: 252 STM*TNSLRSSVRATARESKYPTGFPSCLWTTATLPVTSETAALKLLPSARGRSVSGALQ 431
T + + S R ++++ PT C +T+ + SA R+ +
Sbjct: 307 ERSNTGTNKLSCRGPRKKNR-PTKRLDCRPPVSTVDTAGAPLEGEEKASAANRAPVSGGR 365
Query: 432 TSPGLSTPPKDSSLP 476
SPGL P LP
Sbjct: 366 RSPGLKWPWLCPDLP 380
>06_03_0105 +
16693771-16693780,16693833-16693876,16694274-16694348,
16694548-16694784,16694880-16695050,16695137-16695250
Length = 216
Score = 29.9 bits (64), Expect = 2.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 362 NWKCRCRPQTRRESCWVF 309
N+ CRCRP+ RR W +
Sbjct: 5 NYVCRCRPENRRNKGWAY 22
>03_01_0170 + 1389759-1391159
Length = 466
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -2
Query: 312 ICFPLLWPLLTSANCSFTLCSDESLLPCQG*SLFLLPSNRRGVP 181
+ PLL LL SA+ + +D LL C + +LP RR VP
Sbjct: 5 LAVPLLLCLLASASAARFAPADNHLLACGATAPAVLPDGRRFVP 48
>09_04_0523 +
18310695-18311837,18312050-18312109,18312232-18312324,
18312675-18312731,18313321-18313359
Length = 463
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 6 HLNMTTSFSHSQVKTPSEEKWEAASEP 86
HL++ TSFS QV T +EKW P
Sbjct: 175 HLHVGTSFSIIQVYTLGDEKWRDVRTP 201
>05_06_0104 -
25603568-25603867,25603965-25604162,25604247-25604526,
25604615-25605419,25605518-25606673
Length = 912
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 393 PSARGRSVSGALQTSPGLSTPPKDSSLPTDILKILTTFKS 512
P + R VSGAL+ P S PP T ++K++ +S
Sbjct: 61 PDSFERVVSGALKKLPSQSPPPDSVPASTALIKVIRRAQS 100
>04_01_0408 -
5393354-5393659,5393974-5394219,5394442-5394583,
5394981-5395076,5395153-5395265,5395345-5395559,
5395645-5395742,5395815-5395935,5396020-5396240,
5396625-5396805,5396906-5397188,5397346-5397395,
5398565-5398805
Length = 770
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = -1
Query: 520 HARDLNVVRIFRI-SVGNDESFGGVDNPGDVCSAPLTDRPRADGNSFNAAVSDVTGSVAV 344
H RD+ + R+ S+G + F + + ++ + G + + S + A+
Sbjct: 244 HLRDMELKRLAGDESLGKEAYFAYIAEGLEESMVDWSEVMKFQGKNGSLFNSPAATAAAL 303
Query: 343 VHRHDGNPVGYLLSL 299
VHR+D +GYL S+
Sbjct: 304 VHRYDDKALGYLYSV 318
>03_02_0674 - 10329933-10331537
Length = 534
Score = 28.3 bits (60), Expect = 6.4
Identities = 26/102 (25%), Positives = 41/102 (40%)
Frame = -1
Query: 622 LRRQRPFLC*IPSGSSSLRAVRTRLHSISPFYQAHARDLNVVRIFRISVGNDESFGGVDN 443
LRR +PFL S ++ A S F +A R +V + R + G E+ G
Sbjct: 8 LRRWKPFLAAFASVDGAIEAADPGGLSRDEFRRARGR---IVEMLRGAEGEAEAEGLCLV 64
Query: 442 PGDVCSAPLTDRPRADGNSFNAAVSDVTGSVAVVHRHDGNPV 317
DV + L + A +D+ G V + RH+ +
Sbjct: 65 LDDVMAESLLTLRLVPVTARTLATTDLAGIVGALRRHESERI 106
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -3
Query: 239 SYPVKVSHFSFSPVIDVVYQPSTNRYLHEVVHTEVGYWGVWIQQVLI 99
S P F + D++Y STN + + T + W WI +VLI
Sbjct: 1085 SLPFASRAFQAHAIQDLLYLASTNNE-NRIALTSIAEWPEWILEVLI 1130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,691,879
Number of Sequences: 37544
Number of extensions: 469565
Number of successful extensions: 1376
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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