Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00808
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    50   4e-07
SPAC750.08c |||NAD-dependent malic enzyme|Schizosaccharomyces po...    45   1e-05
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce...    25   9.3  

>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 26/92 (28%), Positives = 50/92 (54%)
 Frame = +1

Query: 1   SNPTSKAECTAEEAYSNTDDRAIFASGSPFPEYRSKSGALFRPGQGNNSYIFPGLALGII 180
           SNPT+  E   ++    +D +A+ A+GSP P   +++G  +   Q NN+ ++P L +  +
Sbjct: 418 SNPTTLMEAKPDQIDKWSDGKALIATGSPLPPL-NRNGKKYVISQCNNALLYPALGVACV 476

Query: 181 CAGILDISDDFMLLAAEALAEIVSEMISHTEA 276
            +    +SD  +  A++ALA +   + +  EA
Sbjct: 477 LSRCKLLSDGMLKAASDALATVPRSLFAADEA 508


>SPAC750.08c |||NAD-dependent malic enzyme|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 228

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 25/92 (27%), Positives = 48/92 (52%)
 Frame = +1

Query: 1   SNPTSKAECTAEEAYSNTDDRAIFASGSPFPEYRSKSGALFRPGQGNNSYIFPGLALGII 180
           SNPT+  E    +    ++ +A+ A+GSP P   +++G  +   Q NN+ ++P L +  +
Sbjct: 81  SNPTTLMEAKPVQIDEWSNGKALMATGSPLPPL-TRNGKEYVISQCNNALLYPALGVACV 139

Query: 181 CAGILDISDDFMLLAAEALAEIVSEMISHTEA 276
            +    +SD  +  A++ALA +   +    EA
Sbjct: 140 LSRCKLLSDGMLKAASDALATVPRSLFVADEA 171


>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -1

Query: 637 FLLFPLGRCSNCIKSCVNF*AIENVNSHQAHGSQSGL*NESVVVVACGG 491
           FLL    +C NC+ +C+    I  +N    + + + L    + ++A GG
Sbjct: 193 FLLAVAIQCFNCVLACLPTRIISRINGVATYLNTAFLFIAGITILAYGG 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,495,907
Number of Sequences: 5004
Number of extensions: 43114
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)