Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00808
(787 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0585 - 5237547-5237930,5237995-5238072,5238163-5238405,523... 100 1e-21
01_06_0551 + 30159789-30159946,30160509-30160629,30160714-301607... 98 6e-21
01_06_0670 + 31069976-31070073,31070461-31070581,31070669-310707... 93 2e-19
07_03_0474 + 18534071-18534238,18534349-18534445,18534992-185351... 85 5e-17
10_08_0551 + 18702081-18702251,18702328-18702424,18702533-187026... 81 1e-15
01_01_0629 - 4738519-4738607,4738700-4738828,4738921-4739011,473... 67 2e-11
02_02_0292 - 8626488-8626703,8626812-8626977,8627445-8627644 31 1.0
03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,588... 30 2.4
05_04_0099 - 17991569-17993014 29 5.5
12_01_1009 - 10253409-10255033,10255301-10255610,10255707-102563... 28 7.3
03_06_0544 + 34639419-34639455,34639763-34640096,34640186-34640480 28 7.3
02_02_0019 - 6148580-6149122 28 9.7
>05_01_0585 -
5237547-5237930,5237995-5238072,5238163-5238405,
5238515-5238661,5238780-5238863,5238969-5239040,
5239153-5239248,5239345-5239410,5239537-5239642,
5239749-5239900,5240238-5240433,5240791-5240879
Length = 570
Score = 100 bits (240), Expect = 1e-21
Identities = 48/85 (56%), Positives = 61/85 (71%)
Frame = +1
Query: 1 SNPTSKAECTAEEAYSNTDDRAIFASGSPFPEYRSKSGALFRPGQGNNSYIFPGLALGII 180
SNPTS +ECTAEEAY+ T A+FASGSPF + G + PGQ NN+YIFPG LG++
Sbjct: 425 SNPTSHSECTAEEAYTWTKGSAVFASGSPFDAVEYE-GKTYVPGQSNNAYIFPGFGLGVV 483
Query: 181 CAGILDISDDFMLLAAEALAEIVSE 255
+G + + DD +L A+EALAE VSE
Sbjct: 484 ISGAIRVHDDMLLAASEALAEQVSE 508
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +3
Query: 255 DDLAYGSLYPPLHMIKDCSVKIAKKIVEHAYNTGKASVQPQPLDTEEFIRAQMYSVEY 428
D+ A G ++PP I+ S IA K+ AY G AS P+P D ++ + MY+ Y
Sbjct: 509 DNFARGLIFPPFTNIRKISAHIAAKVAAKAYELGLASRLPRPDDLVKYAESCMYTPAY 566
>01_06_0551 +
30159789-30159946,30160509-30160629,30160714-30160788,
30160877-30161028,30161103-30161208,30161298-30161363,
30161623-30161694,30161849-30161932,30162108-30162206,
30162841-30162888,30162986-30163039,30163137-30163235,
30163321-30163410,30163503-30163580,30163699-30163773,
30163866-30163956,30164282-30164410,30164501-30164589
Length = 561
Score = 98.3 bits (234), Expect = 6e-21
Identities = 44/85 (51%), Positives = 63/85 (74%)
Frame = +1
Query: 1 SNPTSKAECTAEEAYSNTDDRAIFASGSPFPEYRSKSGALFRPGQGNNSYIFPGLALGII 180
SNPTS++ECTAE+AY+ + RA+FASGSPF G ++ PGQ NN+YIFPG LG++
Sbjct: 416 SNPTSQSECTAEQAYTWSKGRAVFASGSPFDPVEY-DGKIYVPGQANNAYIFPGFGLGVV 474
Query: 181 CAGILDISDDFMLLAAEALAEIVSE 255
+G + + DD +L A+EALA+ V++
Sbjct: 475 MSGAIRVHDDMLLAASEALAQQVTQ 499
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +3
Query: 270 GSLYPPLHMIKDCSVKIAKKIVEHAYNTGKASVQPQPLDTEEFIRAQMYSVEY 428
G YPP I+ S IA + AY G AS +P+P D ++ + MYS Y
Sbjct: 505 GLTYPPFSNIRKISAHIAANVAAKAYELGLASRRPRPKDLVKYAESCMYSPLY 557
>01_06_0670 +
31069976-31070073,31070461-31070581,31070669-31070743,
31070863-31071014,31071171-31071276,31071409-31071474,
31071562-31071657,31071764-31071835,31071925-31072008,
31072147-31072245,31072721-31072768,31072857-31072910,
31072991-31073089,31073182-31073271,31073371-31073448,
31073584-31073658,31073806-31073896,31074014-31074142,
31074235-31074323
Length = 573
Score = 93.5 bits (222), Expect = 2e-19
Identities = 44/84 (52%), Positives = 59/84 (70%)
Frame = +1
Query: 1 SNPTSKAECTAEEAYSNTDDRAIFASGSPFPEYRSKSGALFRPGQGNNSYIFPGLALGII 180
SNPTS++ECTAE+AYS + RAIF SGSPF + LF P Q NN+YIFPG LG++
Sbjct: 428 SNPTSQSECTAEQAYSWSKGRAIFGSGSPFDPVKYND-KLFVPAQANNAYIFPGFGLGVV 486
Query: 181 CAGILDISDDFMLLAAEALAEIVS 252
+G + + D+ +L AAE LA+ V+
Sbjct: 487 ISGAIRVKDEMILAAAEGLADQVT 510
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = +3
Query: 231 GFSGNCVGDDLAYGSLYPPLHMIKDCSVKIAKKIVEHAYNTGKASVQPQPLDTEEFIRAQ 410
G + + + G +YPP I+ S IA ++ AY+ G AS P+P D ++ +
Sbjct: 504 GLADQVTPEHVDKGLIYPPFSCIRKISANIAARVAAKAYDLGLASHLPRPKDLVKYAESC 563
Query: 411 MYSVEY 428
MYS Y
Sbjct: 564 MYSPIY 569
>07_03_0474 +
18534071-18534238,18534349-18534445,18534992-18535122,
18535191-18535286,18535459-18535464,18535521-18535688,
18535892-18536020,18536613-18536673,18536928-18537031,
18537137-18537220,18538433-18538461,18538506-18538617,
18539200-18539313,18539767-18539832,18540237-18540309,
18540396-18540482,18540710-18540764,18540869-18540940,
18541039-18541101,18541177-18541294,18541377-18541451
Length = 635
Score = 85.4 bits (202), Expect = 5e-17
Identities = 41/85 (48%), Positives = 53/85 (62%)
Frame = +1
Query: 1 SNPTSKAECTAEEAYSNTDDRAIFASGSPFPEYRSKSGALFRPGQGNNSYIFPGLALGII 180
SNPT AECT EEA+S ++ IFASGSPF + +G + QGNN Y+FPG+ LG +
Sbjct: 474 SNPTKNAECTPEEAFSILGEKIIFASGSPFSDVDLGNGKIGHSNQGNNMYLFPGIGLGTL 533
Query: 181 CAGILDISDDFMLLAAEALAEIVSE 255
+G ISD + AAE LA + E
Sbjct: 534 LSGARVISDGMLQAAAERLASYMKE 558
>10_08_0551 +
18702081-18702251,18702328-18702424,18702533-18702651,
18702757-18702924,18703296-18703424,18703659-18703719,
18703813-18703916,18704173-18704279,18704319-18704493,
18704657-18704770,18704883-18704966,18705536-18705608,
18705689-18705775,18705863-18705917,18706007-18706078,
18706470-18706532,18706640-18706754,18706844-18706915
Length = 621
Score = 81.0 bits (191), Expect = 1e-15
Identities = 37/85 (43%), Positives = 51/85 (60%)
Frame = +1
Query: 1 SNPTSKAECTAEEAYSNTDDRAIFASGSPFPEYRSKSGALFRPGQGNNSYIFPGLALGII 180
SNPT+KAECT E+ + D A+FASGSPF +G Q NN Y+FPG+ LG +
Sbjct: 462 SNPTTKAECTPEDVFKYVGDNAVFASGSPFSNVTLGNGRQGYANQANNMYLFPGIGLGAL 521
Query: 181 CAGILDISDDFMLLAAEALAEIVSE 255
+G I+D + AAE LA +++
Sbjct: 522 LSGARHITDGMLQSAAECLASYITD 546
>01_01_0629 -
4738519-4738607,4738700-4738828,4738921-4739011,
4739103-4739177,4739529-4739618,4739742-4739840,
4739934-4739987,4740084-4740131,4740232-4740330,
4740458-4740541,4740650-4740721,4740812-4740907,
4741012-4741077,4741148-4741253,4741350-4741501,
4741634-4741708,4741792-4741912,4742968-4743209,
4743328-4743381
Length = 613
Score = 66.9 bits (156), Expect = 2e-11
Identities = 31/70 (44%), Positives = 45/70 (64%)
Frame = +1
Query: 34 EEAYSNTDDRAIFASGSPFPEYRSKSGALFRPGQGNNSYIFPGLALGIICAGILDISDDF 213
E S + RA+FASGSPF +G + PGQ NN+YIFPG LG++ +G + + +D
Sbjct: 479 EAMASFNEGRAVFASGSPFDPVEY-NGKIHVPGQSNNAYIFPGFGLGVVISGAVRVHEDM 537
Query: 214 MLLAAEALAE 243
+L A+E LA+
Sbjct: 538 LLAASETLAD 547
Score = 44.8 bits (101), Expect = 8e-05
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +3
Query: 270 GSLYPPLHMIKDCSVKIAKKIVEHAYNTGKASVQPQPLDTEEFIRAQMYSVEY 428
GS++PP I+ S +IA + AY G A+ PQP D E++ + MY+ Y
Sbjct: 557 GSIFPPFTNIRKISARIAASVAAKAYELGLATRLPQPRDLEKYAESCMYTPVY 609
>02_02_0292 - 8626488-8626703,8626812-8626977,8627445-8627644
Length = 193
Score = 31.1 bits (67), Expect = 1.0
Identities = 22/68 (32%), Positives = 29/68 (42%)
Frame = +3
Query: 225 RRGFSGNCVGDDLAYGSLYPPLHMIKDCSVKIAKKIVEHAYNTGKASVQPQPLDTEEFIR 404
R GFS N + DD G L P H+ + + H + S P+P DT R
Sbjct: 4 RDGFSNNKLLDDFGCGDLTRPEHVFR-------RDRNHHRHRQLGLSSSPKPQDTRRTKR 56
Query: 405 AQMYSVEY 428
Q+ S EY
Sbjct: 57 CQIMSNEY 64
>03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,
5882570-5882618,5882703-5882941,5883073-5883174,
5883634-5883862
Length = 1529
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +1
Query: 1 SNPTSKAECTAEEAYSNTDDRAIFASGSPFPEYRSKSGALFRPGQGNNSYIF 156
S PT + T F SG +P S+SG++ P QG+++ +F
Sbjct: 867 SQPTPFNSSEIDSTGQQTGQFHQFGSGQQYPVSESRSGSVAMPQQGSSATVF 918
>05_04_0099 - 17991569-17993014
Length = 481
Score = 28.7 bits (61), Expect = 5.5
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = +1
Query: 64 AIFASGSPF-----PEYRSKSGALFRPGQGNNSYIFPGLALGIICAGILDISDDFMLLAA 228
A+ SGSPF P +R+ + L R +G+ S + P LG ++ DD LAA
Sbjct: 335 ALIDSGSPFTRLVDPAHRALTKELARQLRGSGSLVPPPAKLGGALELCVEAGDDGDSLAA 394
Query: 229 EALAEIV 249
A+ +V
Sbjct: 395 AAVPPLV 401
>12_01_1009 -
10253409-10255033,10255301-10255610,10255707-10256312,
10256359-10256487
Length = 889
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +1
Query: 4 NPTSKAECTAEEAYSNTDDRAIFASGSP-FPEYRSKSGALFRPGQGNNSYIFPGLALGII 180
N + + +A N + + +G+P F E+ KSG + G PG+ L +
Sbjct: 672 NGLDGVQLLSAKALVNLSVESRYMTGTPNFDEHEQKSGLTWF---GKKP---PGIQLCRV 725
Query: 181 CAGILDISDDFMLLAAEALAEIV 249
+GI I D+F +L +A+ +V
Sbjct: 726 HSGICSIRDNFCILEGKAVERLV 748
>03_06_0544 + 34639419-34639455,34639763-34640096,34640186-34640480
Length = 221
Score = 28.3 bits (60), Expect = 7.3
Identities = 20/77 (25%), Positives = 37/77 (48%)
Frame = +3
Query: 222 RRRGFSGNCVGDDLAYGSLYPPLHMIKDCSVKIAKKIVEHAYNTGKASVQPQPLDTEEFI 401
R GF+ + VGD+L G++ PL + S++ A + +E A Q + E++
Sbjct: 48 RFTGFTTHIVGDELLSGAI-SPLSLPGATSIRTAVEYIETAKRPKATPTARQ--GSHEWV 104
Query: 402 RAQMYSVEYGAALPPAY 452
+A +V +A P +
Sbjct: 105 KAAANAVSSSSAFRPLF 121
>02_02_0019 - 6148580-6149122
Length = 180
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 1 SNPTSKAECTAEEAYS-NTDDRAIFASGSPFPEYRSKS 111
S+ + E A++ Y N D+ A A G P PEY S+S
Sbjct: 117 SSTARRREQYAQDEYEQNFDEGAAAAGGEPEPEYLSRS 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,435,810
Number of Sequences: 37544
Number of extensions: 328757
Number of successful extensions: 908
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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