Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00808
         (787 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical...    99   2e-21
U43375-6|AAA83623.2|  515|Caenorhabditis elegans Hypothetical pr...    33   0.31 
AC024794-2|AAK68498.1|  618|Caenorhabditis elegans Hypothetical ...    29   3.8  
U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,...    28   8.7  
AF016439-5|AAB65900.1|  630|Caenorhabditis elegans Hypothetical ...    28   8.7  

>AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical
           protein Y48B6A.12 protein.
          Length = 620

 Score =   99 bits (238), Expect = 2e-21
 Identities = 51/90 (56%), Positives = 62/90 (68%)
 Frame = +1

Query: 1   SNPTSKAECTAEEAYSNTDDRAIFASGSPFPEYRSKSGALFRPGQGNNSYIFPGLALGII 180
           SNPTSKAECTAE AY  T+   +FASGSPF E    +G L++PGQGNN+YIFPG+ALG +
Sbjct: 446 SNPTSKAECTAETAYRCTNGAVLFASGSPF-ENVEMNGKLYKPGQGNNAYIFPGVALGAV 504

Query: 181 CAGILDISDDFMLLAAEALAEIVSEMISHT 270
                +I D   LLAA  +AE VSE   +T
Sbjct: 505 LFRTKNIPDKLFLLAARMVAEAVSEKSLNT 534



 Score = 61.7 bits (143), Expect = 6e-10
 Identities = 28/65 (43%), Positives = 39/65 (60%)
 Frame = +3

Query: 267 YGSLYPPLHMIKDCSVKIAKKIVEHAYNTGKASVQPQPLDTEEFIRAQMYSVEYGAALPP 446
           Y  +YP L  I++ SVKIA ++ E+ Y    A++ P+P D E FIR  +YSVEY   +  
Sbjct: 535 YSRVYPRLKDIRELSVKIAVEVGEYCYRHDLATLHPKPDDMEMFIRQNLYSVEYDELINK 594

Query: 447 AYPWP 461
            Y WP
Sbjct: 595 TYEWP 599


>U43375-6|AAA83623.2|  515|Caenorhabditis elegans Hypothetical
           protein K09C4.5 protein.
          Length = 515

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = +1

Query: 157 PGLALGIICAGILDISDDFMLLAAEALAEIVSEMISHT 270
           P +   ++C  ++DIS+  ++L    LA+I++EM +HT
Sbjct: 7   PNIIYMLLCFLLMDISNTVLMLLFPTLADIINEMNNHT 44


>AC024794-2|AAK68498.1|  618|Caenorhabditis elegans Hypothetical
           protein Y48G1BM.6 protein.
          Length = 618

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 25/84 (29%), Positives = 33/84 (39%)
 Frame = +3

Query: 147 VHLPGTRARHHLRRDTGHLGRLHATRRRGFSGNCVGDDLAYGSLYPPLHMIKDCSVKIAK 326
           +HLP T +    R  T H   LH T  R  + N          L P LH     + KI +
Sbjct: 62  LHLPHTTSAAAYRTHTLHTNTLHTTTTRHGTANGTW-PRKLRKLVPRLHERPQIAAKIDR 120

Query: 327 KIVEHAYNTGKASVQPQPLDTEEF 398
            I E A N   +    Q +D  +F
Sbjct: 121 IIREKAKNVKNSISCAQIIDFFKF 144


>U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,
            class iii (c) protein1 protein.
          Length = 1400

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = +3

Query: 249  VGD--DLAYGS--LYPPLHMIKDCSVKIAKKIVEHAYNTGKASVQPQPLD-TEEFIRAQM 413
            VGD  +  +G   L P +   KD SV     ++EHA N      QP P+D  +E ++A++
Sbjct: 890  VGDVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQPIPVDKLDEVLKAEI 949


>AF016439-5|AAB65900.1|  630|Caenorhabditis elegans Hypothetical
           protein R02F11.4 protein.
          Length = 630

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 37  EAYSNTDDRAIFASGSPFPEYRSKSGALFRPGQGNNSYIFP 159
           E +S   DR   +  SPF E+  K GAL  P    +S   P
Sbjct: 346 EEFSEDTDRTENSVYSPFREWNGKIGALMTPEASGSSRRIP 386


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,235,120
Number of Sequences: 27780
Number of extensions: 263123
Number of successful extensions: 775
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)